Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M09
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81029-3|CAB02699.2|  207|Caenorhabditis elegans Hypothetical pr...    40   0.001
AL110485-7|CAB60355.1|  237|Caenorhabditis elegans Hypothetical ...    36   0.027
Z78012-6|CAB01416.1|  480|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AY557405-1|AAS64750.1|  480|Caenorhabditis elegans cyclin L prot...    28   5.5  

>Z81029-3|CAB02699.2|  207|Caenorhabditis elegans Hypothetical
           protein C01A2.4 protein.
          Length = 207

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +1

Query: 139 PTVKEIQRQNDRDLRKAGRDLXRDKANLXREEKKL 243
           P  KE++R N R+LRK  RDL  D+  + R EK+L
Sbjct: 7   PDPKELERANKRELRKTNRDLESDRRQMDRREKEL 41


>AL110485-7|CAB60355.1|  237|Caenorhabditis elegans Hypothetical
           protein Y46G5A.12 protein.
          Length = 237

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = +1

Query: 130 RKAPTVKEIQRQNDRDLRKAGRDLXRDKANLXREEKKL 243
           RK P   E+ RQN R L KA R+L R++A +  +EKK+
Sbjct: 8   RKTPA--ELLRQNQRALNKAIRELDRERARMEAQEKKV 43


>Z78012-6|CAB01416.1|  480|Caenorhabditis elegans Hypothetical
           protein C52E4.6a protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 157 QRQNDRDLRKAGRDLXRDKANLXREEKK 240
           +R NDRD R   RD  +D+ +  ++EKK
Sbjct: 415 RRSNDRDGRGDRRDRDKDRGDRRKDEKK 442


>AY557405-1|AAS64750.1|  480|Caenorhabditis elegans cyclin L
           protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 157 QRQNDRDLRKAGRDLXRDKANLXREEKK 240
           +R NDRD R   RD  +D+ +  ++EKK
Sbjct: 415 RRSNDRDGRGDRRDRDKDRGDRRKDEKK 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,273,737
Number of Sequences: 27780
Number of extensions: 168326
Number of successful extensions: 326
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)