Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M04
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    91   1e-19
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    55   7e-09
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.3  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   2.3  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   4.0  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    25   9.1  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 90.6 bits (215), Expect = 1e-19
 Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 15/155 (9%)
 Frame = +3

Query: 90  FQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVY 263
           F I+D   R++ ++ RVIGTLLGT   D   +E+ +CF VPH E ++QVE E+ Y   +Y
Sbjct: 31  FSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVEVEMEYHRAMY 90

Query: 264 XLNRRVNSSESIVGWWATGNEVTNHSSVIHXYYSRECREP------------VHVTLDTS 407
            L+ + N  E +VGW+AT  ++   S++I   Y+    EP            VH+T++T 
Sbjct: 91  HLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPLGTYPHPCVHLTVNTD 149

Query: 408 LAGGRMGLRAYVCVPLGVPNG-KQGCMFTPVXVTL 509
           ++   + ++ YV  P+G+       C F P   T+
Sbjct: 150 VS-SPLAIKTYVSSPVGITERLADSCAFVPTPFTI 183


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 54.8 bits (126), Expect = 7e-09
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
 Frame = +3

Query: 99  VDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAMDVYX 266
           VD+Y R       RV+G LLG ++  VV V N + +P +E          + N+   +  
Sbjct: 28  VDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMNE 87

Query: 267 LNRRVNSSESIVGWWATGNEVTNHSSVIHXYYSRECREPVHVTLDTSLAGGRMGLRAYVC 446
           + +++N++E +VGW+ TG ++      I+    +    PV V +D       +   AY  
Sbjct: 88  MFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYFA 147

Query: 447 V 449
           +
Sbjct: 148 I 148


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 108 YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 233
           Y+ R  DSHR I  L GT  +  +   +   + +K H  ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 491 SEHATLLSIWHSQWYTNICT*THSTSSQRSVQSNMDRLTAFTGIIXV 351
           S  A +L  +   W+ N+      T S+RS+ +N D +T+F+ +  V
Sbjct: 410 SAKARILDSFCIDWHLNV-----QTMSERSILTNRDFITSFSAVAEV 451


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 119 KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 262
           + R S SY   I  ++  SGG + + L  A  RTC  S + T L + CL
Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 135 CENLHFDVRMRPQFEIKQAGWTFTLIL-RAIFN 40
           C+ L  D+    +  +K   WTFTL++ R+ FN
Sbjct: 218 CDKLQ-DIEEERRHFLKSVMWTFTLLISRSCFN 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,714
Number of Sequences: 5004
Number of extensions: 48383
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)