Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_M04
(526 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 80 8e-16
Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z70286-2|CAA94290.1| 529|Caenorhabditis elegans Hypothetical pr... 27 6.2
U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding pro... 27 6.2
U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein. 27 6.2
AJ582071-1|CAE46541.1| 529|Caenorhabditis elegans flavin monoox... 27 6.2
AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and gl... 27 6.2
AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and gl... 27 6.2
AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical ... 27 6.2
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 80.2 bits (189), Expect = 8e-16
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 14/148 (9%)
Frame = +3
Query: 117 RNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYXLNRRVNSSES 296
+N + +GTL+G +KG ++VTNCF +P E D +E + + + ++ + +E
Sbjct: 30 KNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQ 89
Query: 297 IVGWWATGNEVTNHSSVIHXYYSRECRE--------PVHV-TLDTSLAGG---RMGLRAY 440
VGW+ T +++T+ + H YY R E P+ V T+DT+ +G RM +RAY
Sbjct: 90 PVGWFLTTSDITSSCLIYHDYYVRVITEASARRESPPIVVLTIDTTFSGDMSKRMPVRAY 149
Query: 441 VCVPLGVPN--GKQGCMFTPVXVTLTCY 518
+ G+P G +F P+ V L +
Sbjct: 150 LRSKAGIPGAAGPHCAIFNPLRVELAAF 177
>Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical
protein F36H1.9 protein.
Length = 160
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 190 TASACHTKNMPIKSKRNLITRWMFTS 267
T ACHT M + K+N IT W +++
Sbjct: 55 TLVACHTLQMFLAEKKNTITHWKYST 80
>Z70286-2|CAA94290.1| 529|Caenorhabditis elegans Hypothetical
protein K08C7.5 protein.
Length = 529
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 231 RLDRHVLCVARRSSWLLPPLLCRSCP 154
R+ + V V RR +WL+P L R P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230
>U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding
protein LAG-1 protein.
Length = 673
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1
Query: 154 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 306
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643
>U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein.
Length = 673
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1
Query: 154 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 306
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643
>AJ582071-1|CAE46541.1| 529|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 529
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 231 RLDRHVLCVARRSSWLLPPLLCRSCP 154
R+ + V V RR +WL+P L R P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230
>AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform b protein.
Length = 671
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1
Query: 154 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 306
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 591 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 641
>AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform a protein.
Length = 673
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1
Query: 154 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 306
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643
>AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical
protein T04D1.2 protein.
Length = 381
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 85 FYFKLWTHTNVEMQILTELSAPYWARA 165
FY +W+ T V + LT YW R+
Sbjct: 118 FYDMMWSQTTVSYRFLTTPPVTYWIRS 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,218,967
Number of Sequences: 27780
Number of extensions: 284547
Number of successful extensions: 678
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -