Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M03
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   3.1  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   4.1  

>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 328 LSLSGISKKHTIHSTVWILSGVQYY-FSVGSGFN 230
           +SLS    KH  HS +  +SG+ Y+  SVG+G +
Sbjct: 175 ISLSLTMNKHQGHSLLQTVSGLNYHTLSVGTGLS 208


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 359  RYLNFGSCHLP*SFRHQ 309
            R   FGSCH+P S RH+
Sbjct: 1038 RAKGFGSCHVPNSLRHK 1054


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 368  IPLFHHSHYVSPMAEVALTQIETIAQSENCVIAGY 472
            +P   H   V+ +  +  TQI  +A S +CV+AGY
Sbjct: 1133 LPAKTHDERVTAVTVIRCTQI--VALSSSCVMAGY 1165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,179
Number of Sequences: 5004
Number of extensions: 44289
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)