Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M03
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0108 - 11340504-11340680,11341580-11341665,11341784-113418...    74   1e-13
04_04_1264 - 32227812-32228114,32228199-32228349,32228454-322286...    29   4.2  
03_02_0010 + 4903473-4903525,4904117-4904175,4904285-4904355,490...    28   7.4  

>04_03_0108 -
           11340504-11340680,11341580-11341665,11341784-11341827,
           11342339-11342428,11343762-11343928,11343986-11344010,
           11344636-11344797,11345376-11345422,11345926-11345985,
           11346094-11346465
          Length = 409

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
 Frame = +2

Query: 242 AYAKIILHAAKYPHCAVNGVLLADAGKTKEGGRNQS--LDIVDAIPLFHHSHYVS--PMA 409
           AY K+ LHA K+P  AVNG+L+   G+  +G  + +  + I DA+PL HH H++   P  
Sbjct: 13  AYVKLALHALKHPAAAVNGLLV---GRLLDGAASPAAVVSIADAVPLSHHPHHLPLLPTL 69

Query: 410 EVALTQIETIAQSENCVIAGYYAACENFRDNIVERCPXL-XIAEKIVEYFPSAVFIVVDN 586
           E+ALT +E    ++   + GYY A  N R +  +  P    + + +   FP A  +++DN
Sbjct: 70  ELALTLVEDHFAAQGLAVVGYYHA--NARRDDADLPPVAKRVGDHVFRNFPRAAVLLLDN 127

Query: 587 KKM 595
           KK+
Sbjct: 128 KKL 130


>04_04_1264 -
           32227812-32228114,32228199-32228349,32228454-32228691,
           32228786-32228996,32229077-32229270,32229334-32229450,
           32229580-32230522
          Length = 718

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -1

Query: 550 LNNLFSYXQPWTSFNNIITEVLAGCIVTSYHTVF*LSYGFNLCECYFGHW*D 395
           +  +FS      SF  ++ E+++GC ++S H +       NL  C +  W D
Sbjct: 577 MEGIFSVKSDTYSFGVLVLELISGCKISSTHLIMDFP---NLIACAWSLWKD 625


>03_02_0010 +
           4903473-4903525,4904117-4904175,4904285-4904355,
           4904469-4904585,4907001-4907024,4907055-4907117,
           4907303-4907407,4907552-4907602,4907702-4908535
          Length = 458

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 239 GAYAKIILHAAKYPHCAVNGVLLADAGKTKEGGRNQSLDIVDAIP 373
           G    I +    +P    NGV++   GK  +GGR   ++ +   P
Sbjct: 168 GPNVTIAVQDPTFPGYVDNGVIMGQTGKADDGGRYAGIEYMRCAP 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,463,784
Number of Sequences: 37544
Number of extensions: 261142
Number of successful extensions: 610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)