Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_M03
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-4|CAB02093.1| 196|Caenorhabditis elegans Hypothetical pr... 35 0.057
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha... 28 5.0
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha... 28 5.0
U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channe... 28 6.6
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel... 28 6.6
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel... 28 6.6
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel... 28 6.6
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel... 28 6.6
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag... 28 6.6
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu... 28 6.6
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu... 28 6.6
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu... 28 6.6
AL034392-1|CAA22304.1| 75|Caenorhabditis elegans Hypothetical ... 28 6.6
AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical ... 28 6.6
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen... 28 6.6
Z81112-6|CAB03277.1| 673|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z77136-10|CAB00887.1| 673|Caenorhabditis elegans Hypothetical p... 27 8.7
U50311-7|AAA92311.1| 401|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z79754-4|CAB02093.1| 196|Caenorhabditis elegans Hypothetical
protein F25H2.4 protein.
Length = 196
Score = 34.7 bits (76), Expect = 0.057
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +2
Query: 230 IETGA--YAKIILHAAKYPHCAVNGVLLADAGKTKEGGRNQSLDIVDAIPLFHHSHYVSP 403
+ET A Y+ IILH KYP V G+L+ + K+G + + + +PL H S ++P
Sbjct: 5 VETQALPYSTIILHCLKYPAKGVFGLLIGN----KKGDK---VTVTSCVPLCHESTPLAP 57
Query: 404 MAEVA 418
E+A
Sbjct: 58 PLELA 62
>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase 2
protein.
Length = 1668
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 494 RDNIVERCPXLXIAEKIVEYFPSAVFIVVDNKKMVQHLXSPAIKVHKYSDG 646
R I+ + + V++ PS+V+++VD K + L + ++H DG
Sbjct: 852 RKEIISENTFILTLDGDVDFTPSSVYLLVDLMKKNRRLGAACGRIHPRGDG 902
>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
protein 2 protein.
Length = 1668
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 494 RDNIVERCPXLXIAEKIVEYFPSAVFIVVDNKKMVQHLXSPAIKVHKYSDG 646
R I+ + + V++ PS+V+++VD K + L + ++H DG
Sbjct: 852 RKEIISENTFILTLDGDVDFTPSSVYLLVDLMKKNRRLGAACGRIHPRGDG 902
>U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform f protein.
Length = 1418
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 452 NCVIAGYYAACENFRDNIVERCPXLXIAEK-IVEYFPSAVFIVV 580
NCV G Y CE+ D RC L I + I YF + I +
Sbjct: 143 NCVTLGMYRPCEDGPDCDTYRCQILDIIDNCIFVYFAFEMVIKI 186
>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform c protein.
Length = 1852
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 452 NCVIAGYYAACENFRDNIVERCPXLXIAEK-IVEYFPSAVFIVV 580
NCV G Y CE+ D RC L I + I YF + I +
Sbjct: 143 NCVTLGMYRPCEDGPDCDTYRCQILDIIDNCIFVYFAFEMVIKI 186
>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform a protein.
Length = 1837
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 452 NCVIAGYYAACENFRDNIVERCPXLXIAEK-IVEYFPSAVFIVV 580
NCV G Y CE+ D RC L I + I YF + I +
Sbjct: 143 NCVTLGMYRPCEDGPDCDTYRCQILDIIDNCIFVYFAFEMVIKI 186
>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform d protein.
Length = 1885
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 452 NCVIAGYYAACENFRDNIVERCPXLXIAEK-IVEYFPSAVFIVV 580
NCV G Y CE+ D RC L I + I YF + I +
Sbjct: 143 NCVTLGMYRPCEDGPDCDTYRCQILDIIDNCIFVYFAFEMVIKI 186
>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform e protein.
Length = 1844
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 452 NCVIAGYYAACENFRDNIVERCPXLXIAEK-IVEYFPSAVFIVV 580
NCV G Y CE+ D RC L I + I YF + I +
Sbjct: 143 NCVTLGMYRPCEDGPDCDTYRCQILDIIDNCIFVYFAFEMVIKI 186
>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
sensitive calciumchannel alpha1 subunit isoform D
protein.
Length = 1844
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 452 NCVIAGYYAACENFRDNIVERCPXLXIAEK-IVEYFPSAVFIVV 580
NCV G Y CE+ D RC L I + I YF + I +
Sbjct: 143 NCVTLGMYRPCEDGPDCDTYRCQILDIIDNCIFVYFAFEMVIKI 186
>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform C protein.
Length = 1852
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 452 NCVIAGYYAACENFRDNIVERCPXLXIAEK-IVEYFPSAVFIVV 580
NCV G Y CE+ D RC L I + I YF + I +
Sbjct: 143 NCVTLGMYRPCEDGPDCDTYRCQILDIIDNCIFVYFAFEMVIKI 186
>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform B protein.
Length = 1885
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 452 NCVIAGYYAACENFRDNIVERCPXLXIAEK-IVEYFPSAVFIVV 580
NCV G Y CE+ D RC L I + I YF + I +
Sbjct: 143 NCVTLGMYRPCEDGPDCDTYRCQILDIIDNCIFVYFAFEMVIKI 186
>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform A protein.
Length = 1837
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 452 NCVIAGYYAACENFRDNIVERCPXLXIAEK-IVEYFPSAVFIVV 580
NCV G Y CE+ D RC L I + I YF + I +
Sbjct: 143 NCVTLGMYRPCEDGPDCDTYRCQILDIIDNCIFVYFAFEMVIKI 186
>AL034392-1|CAA22304.1| 75|Caenorhabditis elegans Hypothetical
protein Y40B1A.1 protein.
Length = 75
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 110 LTYYRIFFLLI*LYNDMHISFSWF*SRKKT 21
L Y+R FLL ++ + ++ +WF SRK T
Sbjct: 33 LKYFRAVFLLFHSFSRVFVAKTWFYSRKTT 62
>AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical
protein Y54E5A.7 protein.
Length = 622
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 407 AEVALTQIETIAQSENCVIAGYYAACENFRDNIVERCPXLXIAEKIVEYFPSAV 568
A L + E + E + YYA + D I++ I EKI +YFP V
Sbjct: 261 ALATLQKFEETTKPEVPIDHEYYAQRKEITDMILKAARGAEIHEKIEKYFPGLV 314
>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans
voltage-dependent calcium channelalpha13 subunit
protein.
Length = 1837
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 452 NCVIAGYYAACENFRDNIVERCPXLXIAEK-IVEYFPSAVFIVV 580
NCV G Y CE+ D RC L I + I YF + I +
Sbjct: 143 NCVTLGMYRPCEDGPDCDTYRCQILDIIDNCIFVYFAFEMVIKI 186
>Z81112-6|CAB03277.1| 673|Caenorhabditis elegans Hypothetical
protein ZC376.3 protein.
Length = 673
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 343 VPATFLSLSGISKKHTIHSTVWILSGVQYYFSV 245
+ T+ L IS + + + +W+L YY SV
Sbjct: 280 IDKTYSCLRNISAQEVLDAQLWVLQNTTYYISV 312
>Z77136-10|CAB00887.1| 673|Caenorhabditis elegans Hypothetical
protein ZC376.3 protein.
Length = 673
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 343 VPATFLSLSGISKKHTIHSTVWILSGVQYYFSV 245
+ T+ L IS + + + +W+L YY SV
Sbjct: 280 IDKTYSCLRNISAQEVLDAQLWVLQNTTYYISV 312
>U50311-7|AAA92311.1| 401|Caenorhabditis elegans Hypothetical
protein C25E10.1 protein.
Length = 401
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +2
Query: 410 EVALTQIETIAQSENCVIAGYYAACENFRDNIVERCPXLXIAEKIVEYFP 559
EVA I + +E +I C+ FRD I + I+ Y P
Sbjct: 318 EVAFLIINFVLHNEEKIIGESLTVCDKFRDQIADGLHEYYKKNDIINYAP 367
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,035,333
Number of Sequences: 27780
Number of extensions: 246798
Number of successful extensions: 622
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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