Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_M01
(554 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 50 1e-06
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 50 1e-06
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 46 1e-05
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 46 1e-05
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 46 1e-05
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 45 3e-05
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 40 0.002
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 40 0.002
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 39 0.002
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 39 0.002
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 39 0.002
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 39 0.002
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 39 0.002
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 39 0.002
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 39 0.002
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 38 0.004
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 38 0.004
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 38 0.004
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 38 0.005
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 38 0.005
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 38 0.006
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 38 0.006
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 37 0.008
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 36 0.015
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 36 0.015
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 36 0.015
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 35 0.045
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 34 0.079
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 34 0.079
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 34 0.079
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 34 0.079
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 33 0.10
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 33 0.10
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 33 0.10
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 33 0.14
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 33 0.14
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 33 0.14
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 33 0.14
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 33 0.14
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 33 0.14
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 33 0.14
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.18
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 32 0.24
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 32 0.32
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 31 0.42
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 31 0.56
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 31 0.56
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 31 0.56
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 31 0.56
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 31 0.56
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 31 0.74
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 31 0.74
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 31 0.74
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 30 0.97
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 30 0.97
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 30 0.97
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 30 1.3
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 30 1.3
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 30 1.3
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 30 1.3
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 30 1.3
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 29 3.0
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 3.9
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 3.9
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 3.9
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 28 5.2
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 28 5.2
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 28 5.2
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 28 5.2
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 28 5.2
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 28 5.2
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 28 5.2
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 28 5.2
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical pr... 27 6.9
U41109-13|AAB37036.1| 264|Caenorhabditis elegans Posterior segr... 27 6.9
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 27 6.9
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 27 6.9
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 27 6.9
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 27 6.9
AB006208-1|BAA33854.1| 264|Caenorhabditis elegans cytoplasmic z... 27 6.9
Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 27 9.1
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 27 9.1
AC006672-8|AAY43997.1| 125|Caenorhabditis elegans Hypothetical ... 27 9.1
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/67 (35%), Positives = 40/67 (59%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 304
+K+FVG+LP L+++F+ F VTECDI+ FVH++ E+ I L T +
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIE-EDDVDPIITRLTGYTID 61
Query: 305 GGVISVE 325
G V++++
Sbjct: 62 GKVVNIK 68
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/67 (35%), Positives = 40/67 (59%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 304
+K+FVG+LP L+++F+ F VTECDI+ FVH++ E+ I L T +
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIE-EDDVDPIITRLTGYTID 61
Query: 305 GGVISVE 325
G V++++
Sbjct: 62 GKVVNIK 68
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM------NRCGFVHMQTEEQAAAAIRAL 286
T V+V + E L KLF +FG +T C++M GFV E+A A++AL
Sbjct: 153 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 212
Query: 287 HNSTFNG 307
H+ST G
Sbjct: 213 HDSTIEG 219
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM------NRCGFVHMQTEEQAAAAIRAL 286
T V+V + E L KLF +FG +T C++M GFV E+A A++AL
Sbjct: 150 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 209
Query: 287 HNSTFNG 307
H+ST G
Sbjct: 210 HDSTIEG 216
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRALH 289
+F+ +L + + + F FG + C + GFVH +TEE A AI+ ++
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 118
Query: 290 NSTFNGGVISV 322
G + V
Sbjct: 119 GMLLAGKKVFV 129
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM------NRCGFVHMQTEEQAAAAIRAL 286
T V+V + E L KLF +FG +T C++M GFV E+A A++AL
Sbjct: 213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 287 HNSTFNG 307
H+ST G
Sbjct: 273 HDSTIEG 279
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRALH 289
+F+ +L + + + F FG + C + GFVH +TEE A AI+ ++
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 290 NSTFNGGVISV 322
G + V
Sbjct: 182 GMLLAGKKVFV 192
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 45.2 bits (102), Expect = 3e-05
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM------NRCGFVHMQTEEQAAAAIRAL 286
T V+V + E L K+F +FG +T C++M GFV E+A A++AL
Sbjct: 213 TNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 287 HNSTFNG 307
H+ST G
Sbjct: 273 HDSTIEG 279
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRALH 289
+F+ +L + + + F FG + C + GFVH +TEE A AI+ ++
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 290 NSTFNGGVISV 322
G + V
Sbjct: 182 GMLLAGKKVFV 192
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM------NRCGFVHMQTEEQAAAAIRALH 289
++ V ++P + DL+ +FE+FGVV++ +I+ GFV M+ + A A + LH
Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELH 213
Query: 290 NSTFNGGVISV 322
S G I V
Sbjct: 214 GSMIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM------NRCGFVHMQTEEQAAAAIRALH 289
++ V ++P + DL+ +FE+FGVV++ +I+ GFV M+ + A A + LH
Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELH 213
Query: 290 NSTFNGGVISV 322
S G I V
Sbjct: 214 GSMIEGRKIEV 224
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 283
K+FVG +P+ D R+LFE++G V C+I+ C FV + A A A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 284 LHN 292
LHN
Sbjct: 116 LHN 118
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIR 280
+ K+F+G L + E+LR++F +FG + +C ++ C FV A A +
Sbjct: 141 ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATK 200
Query: 281 ALHNS 295
+H+S
Sbjct: 201 EMHHS 205
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 283
K+FVG +P+ D R+LFE++G V C+I+ C FV + A A A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 284 LHN 292
LHN
Sbjct: 116 LHN 118
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIR 280
+ K+F+G L + E+LR++F +FG + +C ++ C FV A A +
Sbjct: 141 ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATK 200
Query: 281 ALHNS 295
+H+S
Sbjct: 201 EMHHS 205
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 283
K+FVG +P+ D R+LFE++G V C+I+ C FV + A A A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 284 LHN 292
LHN
Sbjct: 116 LHN 118
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIR 280
+ K+F+G L + E+LR++F +FG + +C ++ C FV A A +
Sbjct: 141 ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATK 200
Query: 281 ALHNS 295
+H+S
Sbjct: 201 EMHHS 205
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 283
K+FVG +P+ D R+LFE++G V C+I+ C FV + A A A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 284 LHN 292
LHN
Sbjct: 116 LHN 118
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIR 280
+ K+F+G L + E+LR++F +FG + +C ++ C FV A A +
Sbjct: 141 ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATK 200
Query: 281 ALHNS 295
+H+S
Sbjct: 201 EMHHS 205
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 283
K+FVG +P+ D R+LFE++G V C+I+ C FV + A A A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 284 LHN 292
LHN
Sbjct: 116 LHN 118
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIR 280
+ K+F+G L + E+LR++F +FG + +C ++ C FV A A +
Sbjct: 141 ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATK 200
Query: 281 ALHNS 295
+H+S
Sbjct: 201 EMHHS 205
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 283
K+FVG +P+ D R+LFE++G V C+I+ C FV + A A A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 284 LHN 292
LHN
Sbjct: 116 LHN 118
Score = 33.9 bits (74), Expect = 0.079
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
+ K+F+G L + E+LR++F +FG + +C ++
Sbjct: 141 ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVL 174
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 283
K+FVG +P+ D R+LFE++G V C+I+ C FV + A A A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 284 LHN 292
LHN
Sbjct: 116 LHN 118
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIR 280
+ K+F+G L + E+LR++F +FG + +C ++ C FV A A +
Sbjct: 141 ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATK 200
Query: 281 ALHNS 295
+H+S
Sbjct: 201 EMHHS 205
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR---CGFVHMQTEEQAAAAIRALHNST 298
KV+VG LP + ++L ++F+RFG + + + R FV A A+RAL S
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 299 FNGGVISVE 325
G VE
Sbjct: 64 ICGVRARVE 72
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR---CGFVHMQTEEQAAAAIRALHNST 298
KV+VG LP + ++L ++F+RFG + + + R FV A A+RAL S
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 299 FNGGVISVE 325
G VE
Sbjct: 64 ICGVRARVE 72
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR---CGFVHMQTEEQAAAAIRALHNST 298
KV+VG LP + ++L ++F+RFG + + + R FV A A+RAL S
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 299 FNGGVISVE 325
G VE
Sbjct: 64 ICGVRARVE 72
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCG----FVHMQTEEQAAAAIRALHNS 295
KV+VG+LP + +++ +F ++G + DI + G FV + A A+RA
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 296 TFNGGVISVE 325
F+G I VE
Sbjct: 70 EFDGRRIRVE 79
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCG----FVHMQTEEQAAAAIRALHNS 295
KV+VG+LP + +++ +F ++G + DI + G FV + A A+RA
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 296 TFNGGVISVE 325
F+G I VE
Sbjct: 70 EFDGRRIRVE 79
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 37.5 bits (83), Expect = 0.006
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR-CGFVHMQTEEQAAAAIRALHNSTFN 304
++FVG+LP K +L++LF G + EC + + F+ + T A +A A+ +
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRLDTRAHAESAKEAIDGRIIH 176
Query: 305 GGVISV 322
G + V
Sbjct: 177 GRQVRV 182
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 37.5 bits (83), Expect = 0.006
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR-CGFVHMQTEEQAAAAIRALHNSTFN 304
++FVG+LP K +L++LF G + EC + + F+ + T A +A A+ +
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRLDTRAHAESAKEAIDGRIIH 176
Query: 305 GGVISV 322
G + V
Sbjct: 177 GRQVRV 182
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 37.1 bits (82), Expect = 0.008
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNST 298
T V+VG++ Q + DLR LF +G + E I R FV + +E A AI ++
Sbjct: 237 TSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKE 296
Query: 299 FNGGVI 316
G +
Sbjct: 297 MAGNQV 302
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 36.3 bits (80), Expect = 0.015
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+FVG +P+ + +DLR LFE+FG + E I+
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTIL 61
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 36.3 bits (80), Expect = 0.015
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNG 307
+V++G LP + D+ F +G +++ + N GFV Q + A A+ L+ G
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCG 62
Query: 308 GVISVE 325
+ +E
Sbjct: 63 ERVILE 68
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 36.3 bits (80), Expect = 0.015
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+FVG +P+ + +DLR LFE+FG + E I+
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTIL 61
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 34.7 bits (76), Expect = 0.045
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-----NRC-GF--VHMQTEEQAAAAIRA 283
++F+ +LP +K +DL+ LF+++G V+E ++ C GF V E A AA A
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSA 339
Query: 284 LHNSTFNGGVISV 322
L F G ++ +
Sbjct: 340 LDGYVFKGRMMHI 352
Score = 31.9 bits (69), Expect = 0.32
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCG---FVHMQTEEQAAAAIRALHNS 295
T + +LP G + E+L+++FE+FG T+ + G V M A A RAL S
Sbjct: 483 TVMLAKNLPAGVESEELQRMFEKFGDCTKVLMPTEGGVSALVIMGNPVDAKKAFRALAYS 542
Query: 296 TFNGGVISVE 325
F + +E
Sbjct: 543 RFRSQPLYLE 552
Score = 31.1 bits (67), Expect = 0.56
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDI-------MNRCGFVHMQTEEQAAAAIRA 283
T++ V +LP + LRK FE++G +++ + FV E A+ A+
Sbjct: 3 TRLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAK 62
Query: 284 LHNSTFNGGVISVE 325
+ + FN ++VE
Sbjct: 63 SNQTFFNSKKLTVE 76
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 33.9 bits (74), Expect = 0.079
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+F+G L + E+LR F RFG V EC +M
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVM 77
Score = 30.7 bits (66), Expect = 0.74
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 283
KVF+G L S ED+++ FE +G V + +M GFV ++E A +
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDE-VADKVCE 193
Query: 284 LHNSTFNGGVI 316
+H NG ++
Sbjct: 194 IHFHEINGKMV 204
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 33.9 bits (74), Expect = 0.079
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECD 217
KVFVG LP +DLR FE+FG V + +
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIE 140
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 33.9 bits (74), Expect = 0.079
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECD 217
KVFVG LP +DLR FE+FG V + +
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIE 140
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 33.9 bits (74), Expect = 0.079
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+F+G L + E+LR F RFG V EC +M
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVM 77
Score = 30.7 bits (66), Expect = 0.74
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 283
KVF+G L S ED+++ FE +G V + +M GFV ++E A +
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDE-VADKVCE 193
Query: 284 LHNSTFNGGVI 316
+H NG ++
Sbjct: 194 IHFHEINGKMV 204
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 33.5 bits (73), Expect = 0.10
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR------CGFVHMQTEEQAAAAIRALH 289
+++V ++P + +DL +F +G V +I+ GFV + + E A ALH
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALH 111
Query: 290 NSTFNGGVISV 322
S G +I V
Sbjct: 112 ESHVQGRIIEV 122
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 33.5 bits (73), Expect = 0.10
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAA 268
++FVG+LP K +L++LF G + EC + + GF ++ AA
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYLSGK-GFAFLRLISNAA 162
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 33.5 bits (73), Expect = 0.10
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR------CGFVHMQTEEQAAAAIRALH 289
+++V ++P + +DL +F +G V +I+ GFV + + E A ALH
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALH 111
Query: 290 NSTFNGGVISV 322
S G +I V
Sbjct: 112 ESHVQGRIIEV 122
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCG--FVHMQTEEQAAAAIRALHNST 298
T V+VG++ ++ E +R+ F FG +TE I G FV ++ AA AI ++N
Sbjct: 128 TSVYVGNIASLTEDE-IRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQD 186
Query: 299 FNGGVI 316
G ++
Sbjct: 187 VGGQLV 192
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCG--FVHMQTEEQAAAAIRALHNST 298
T V+VG++ ++ E +R+ F FG +TE I G FV ++ AA AI ++N
Sbjct: 138 TSVYVGNIASLTEDE-IRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQD 196
Query: 299 FNGGVI 316
G ++
Sbjct: 197 VGGQLV 202
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCG--FVHMQTEEQAAAAIRALHNST 298
T V+VG++ ++ E +R+ F FG +TE I G FV ++ AA AI ++N
Sbjct: 241 TSVYVGNIASLTEDE-IRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQD 299
Query: 299 FNGGVI 316
G ++
Sbjct: 300 VGGQLV 305
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCG--FVHMQTEEQAAAAIRALHNST 298
T V+VG++ ++ E +R+ F FG +TE I G FV ++ AA AI ++N
Sbjct: 209 TSVYVGNIASLTEDE-IRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQD 267
Query: 299 FNGGVI 316
G ++
Sbjct: 268 VGGQLV 273
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMN------RCGFVHMQTEEQAAAA 274
+FVG++P K ++R +FE G V E DI FV QT +QA A
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQA 224
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMN------RCGFVHMQTEEQAAAA 274
+FVG++P K ++R +FE G V E DI FV QT +QA A
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQA 224
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMN------RCGFVHMQTEEQAAAA 274
+FVG++P K ++R +FE G V E DI FV QT +QA A
Sbjct: 148 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQA 201
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +2
Query: 116 VPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRC---GFVHMQTEEQAAAAIRAL 286
+P +F ++P+G++PE ++ +F +F + E M F+ ++E+ + A +AL
Sbjct: 140 LPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQAL 199
Query: 287 HN 292
N
Sbjct: 200 DN 201
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 32.3 bits (70), Expect = 0.24
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
TK+FVG LP + + L + FE+FG + E ++
Sbjct: 35 TKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVI 67
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 31.9 bits (69), Expect = 0.32
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +3
Query: 309 ASYPWSAVASKNAGSVGAVAVDEVPCAVAWSGA--GGGPVRHAPPPRDAP 452
AS P A + +AG GA P A +GA GG H PPPR AP
Sbjct: 257 ASEPGPAGPAGDAGPDGAPGNAGAPGAPGEAGAPGSGGGCDHCPPPRTAP 306
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 31.5 bits (68), Expect = 0.42
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +2
Query: 119 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAA 274
P + V +L + +DLR +F FG + +CD++ GF++ E A AA
Sbjct: 74 PSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAA 133
Query: 275 IRALHNSTFNGGVISVE 325
L N+ +G I V+
Sbjct: 134 RDKLCNTDLDGHKIRVD 150
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/60 (21%), Positives = 26/60 (43%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNG 307
++++G L +D+ F +G + + + N GFV + A A+ L+ G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/60 (21%), Positives = 26/60 (43%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNG 307
++++G L +D+ F +G + + + N GFV + A A+ L+ G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/60 (21%), Positives = 26/60 (43%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNG 307
++++G L +D+ F +G + + + N GFV + A A+ L+ G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 31.1 bits (67), Expect = 0.56
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Frame = +2
Query: 113 MVPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRC-------GFVHMQTEEQA 265
++P ++FVG P + +LR+ FE+F V + ++ GF+ +TE+QA
Sbjct: 63 LIPN-RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQA 119
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 31.1 bits (67), Expect = 0.56
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Frame = +2
Query: 113 MVPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRC-------GFVHMQTEEQA 265
++P ++FVG P + +LR+ FE+F V + ++ GF+ +TE+QA
Sbjct: 64 LIPN-RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQA 120
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 119 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
P+ +FV L + EDL +F RFG + C+I+
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIV 273
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 119 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
P+ +FV L + EDL +F RFG + C+I+
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIV 273
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 119 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
P+ +FV L + EDL +F RFG + C+I+
Sbjct: 170 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIV 204
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 30.3 bits (65), Expect = 0.97
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRC-------GFVHMQTEEQAAAAIRA 283
T VFV + + E L +F +FG +T +M GFV ++ A A+
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 297
Query: 284 LHNSTFNG 307
L++S G
Sbjct: 298 LNDSILEG 305
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 30.3 bits (65), Expect = 0.97
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRC-------GFVHMQTEEQAAAAIRA 283
T VFV + + E L +F +FG +T +M GFV ++ A A+
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 297
Query: 284 LHNSTFNG 307
L++S G
Sbjct: 298 LNDSILEG 305
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 30.3 bits (65), Expect = 0.97
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +2
Query: 179 KLFERFGVVTE----CDIMNRCGFVHMQTEEQAAAAIRALHNSTFNGGVISV 322
+L++ FG +T+ C + + GFV T A I + T NG +ISV
Sbjct: 111 ELYQAFGGITDGVVQCHVADGYGFVLFDTRANAQKKIVEMDGKTLNGKLISV 162
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -2
Query: 298 CRVVKRANCCCRLFLCLHMHEPAPV--HYITLCDDAE 194
C V CR +C H +P P+ H LC DA+
Sbjct: 759 CSCVTGGQTVCRQMVCPHCDDPVPIEGHCCPLCKDAK 795
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -2
Query: 298 CRVVKRANCCCRLFLCLHMHEPAPV--HYITLCDDAE 194
C V CR +C H +P P+ H LC DA+
Sbjct: 693 CSCVTGGQTVCRQMVCPHCDDPVPIEGHCCPLCKDAK 729
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -2
Query: 298 CRVVKRANCCCRLFLCLHMHEPAPV--HYITLCDDAE 194
C V CR +C H +P P+ H LC DA+
Sbjct: 759 CSCVTGGQTVCRQMVCPHCDDPVPIEGHCCPLCKDAK 795
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -2
Query: 298 CRVVKRANCCCRLFLCLHMHEPAPV--HYITLCDDAE 194
C V CR +C H +P P+ H LC DA+
Sbjct: 693 CSCVTGGQTVCRQMVCPHCDDPVPIEGHCCPLCKDAK 729
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -2
Query: 298 CRVVKRANCCCRLFLCLHMHEPAPV--HYITLCDDAE 194
C V CR +C H +P P+ H LC DA+
Sbjct: 693 CSCVTGGQTVCRQMVCPHCDDPVPIEGHCCPLCKDAK 729
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -2
Query: 298 CRVVKRANCCCRLFLCLHMHEPAPV--HYITLCDDAE 194
C V CR +C H +P P+ H LC DA+
Sbjct: 693 CSCVTGGQTVCRQMVCPHCDDPVPIEGHCCPLCKDAK 729
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFG 199
KVFVG LP K D+ F R+G
Sbjct: 89 KVFVGGLPSCVKESDILNFFSRYG 112
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+FVG L + + +R+ + +FG +T+ +M
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVM 55
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+FVG L + + +R+ + +FG +T+ +M
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVM 55
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+FVG L + + +R+ + +FG +T+ +M
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVM 55
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +3
Query: 318 PWSAVASKNAGSVGAVAVDEVPCAVAWSGA--GGGPVRHAPPPRDAP 452
P A +AG GA P A +GA GG H PPPR AP
Sbjct: 264 PGPAGPPGDAGPDGAPGNPGQPGAPGDAGAPGSGGGCDHCPPPRTAP 310
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/63 (34%), Positives = 27/63 (42%)
Frame = +1
Query: 232 RVRAYADRGTSGSSNSRASQLDI*RRRHIRGARSHQRTRAAWGRSRWTRFHARWHGAARE 411
R R A R S S+ RRR +RS R R R R +R +R +RE
Sbjct: 1514 RSRDRARRSRSREHKRARSRSAERRRRSRTRSRSRSRERYRSRRDRRSRTKSRSRSRSRE 1573
Query: 412 AAP 420
AAP
Sbjct: 1574 AAP 1576
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 98 YKSVIMVPQTKVFVGSLPQGSKPEDLRKLFERFGVV 205
+ +I + +T VF+G LP+ E++ ++F FGVV
Sbjct: 311 HNRIIDIHRT-VFLGGLPRIVTAEEIAQMFSEFGVV 345
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 98 YKSVIMVPQTKVFVGSLPQGSKPEDLRKLFERFGVV 205
+ +I + +T VF+G LP+ E++ ++F FGVV
Sbjct: 311 HNRIIDIHRT-VFLGGLPRIVTAEEIAQMFSEFGVV 345
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 309 ASYPWSAVASKNAGSVGAVAVDEVPCAVAWSGA--GGGPVRHAPPPR 443
AS P A + +AG GA P A +GA GG H PPPR
Sbjct: 267 ASEPGPAGPAGDAGPDGAPGNAGAPGAPGEAGAPGSGGGCDHCPPPR 313
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 98 YKSVIMVPQTKVFVGSLPQGSKPEDLRKLFERFGVV 205
+ +I + +T VF+G LP+ E++ ++F FGVV
Sbjct: 97 HNRIIDIHRT-VFLGGLPRIVTAEEIAQMFSEFGVV 131
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 98 YKSVIMVPQTKVFVGSLPQGSKPEDLRKLFERFGVV 205
+ +I + +T VF+G LP+ E++ ++F FGVV
Sbjct: 311 HNRIIDIHRT-VFLGGLPRIVTAEEIAQMFSEFGVV 345
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/63 (34%), Positives = 27/63 (42%)
Frame = +1
Query: 232 RVRAYADRGTSGSSNSRASQLDI*RRRHIRGARSHQRTRAAWGRSRWTRFHARWHGAARE 411
R R A R S S+ RRR +RS R R R R +R +R +RE
Sbjct: 139 RSRDRARRSRSREHKRARSRSAERRRRSRTRSRSRSRERYRSRRDRRSRTKSRSRSRSRE 198
Query: 412 AAP 420
AAP
Sbjct: 199 AAP 201
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMN 226
VFVG++P + +R++F FG ++ + N
Sbjct: 145 VFVGNMPLTMNEKSVRRIFSDFGTISSVRMRN 176
>Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical
protein W03G11.1b protein.
Length = 279
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 348 GSVGAVAVDEVPCAVAWSGAGGGPVRHAPPPRDAP 452
G+ G D P A G+ GG H PPPR AP
Sbjct: 244 GAPGKSGSDGQPGAPGKEGSRGG-CDHCPPPRTAP 277
>Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical
protein W03G11.1a protein.
Length = 332
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 348 GSVGAVAVDEVPCAVAWSGAGGGPVRHAPPPRDAP 452
G+ G D P A G+ GG H PPPR AP
Sbjct: 297 GAPGKSGSDGQPGAPGKEGSRGG-CDHCPPPRTAP 330
>Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.2 protein.
Length = 306
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +3
Query: 402 GAGGGPVRHAPPPRDAP 452
GAGGG H PPPR AP
Sbjct: 289 GAGGG-CDHCPPPRTAP 304
>U41109-13|AAB37036.1| 264|Caenorhabditis elegans Posterior
segregation protein 1 protein.
Length = 264
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 149 PQG-SKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNST 298
P+G + P+ L ++F + C RC F+H + AA H +T
Sbjct: 134 PRGRNHPKYKTVLCDKFSMTGNCKYGTRCQFIHKIVDGNAAKLASGAHANT 184
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +3
Query: 402 GAGGGPVRHAPPPRDAP 452
GAGGG H PPPR AP
Sbjct: 312 GAGGG-CDHCPPPRTAP 327
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDI 220
+V+V S+ DL+ +FE FG + +C +
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQL 238
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDI 220
+V+V S+ DL+ +FE FG + +C +
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQL 238
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDI 220
+V+V S+ DL+ +FE FG + +C +
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQL 238
>AB006208-1|BAA33854.1| 264|Caenorhabditis elegans cytoplasmic
zinc-finger protein protein.
Length = 264
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 149 PQG-SKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNST 298
P+G + P+ L ++F + C RC F+H + AA H +T
Sbjct: 134 PRGRNHPKYKTVLCDKFSMTGNCKYGTRCQFIHKIVDGNAAKLASGAHANT 184
>Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical
protein H19N07.2c protein.
Length = 1135
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 176 RKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRA--LHNSTFNGG 310
+K+ ERF + ++ + C M TEE ++ A +H+ F+GG
Sbjct: 395 QKINERFSFPEKMNLASCCELGPMLTEEDCVYSLHAVLVHSGEFHGG 441
>Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical
protein H19N07.2b protein.
Length = 1130
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 176 RKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRA--LHNSTFNGG 310
+K+ ERF + ++ + C M TEE ++ A +H+ F+GG
Sbjct: 395 QKINERFSFPEKMNLASCCELGPMLTEEDCVYSLHAVLVHSGEFHGG 441
>Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical
protein H19N07.2a protein.
Length = 1133
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 176 RKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRA--LHNSTFNGG 310
+K+ ERF + ++ + C M TEE ++ A +H+ F+GG
Sbjct: 395 QKINERFSFPEKMNLASCCELGPMLTEEDCVYSLHAVLVHSGEFHGG 441
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAI 277
Q VFVG++ + +R +F + G V +++ GF+ + A AI
Sbjct: 17 QRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAI 76
Query: 278 RALHNSTFNGGVISVE 325
R L+ +G ++ V+
Sbjct: 77 RNLNGYELSGRILRVD 92
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 98 YKSVIMVPQTKVFVGSLPQGSKPEDLRKLFERFGVVT 208
+K + ++KVFV ++ + ++L+ LF +FG VT
Sbjct: 674 FKFSTTLEKSKVFVRNVHFQATDDELKALFSKFGTVT 710
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 348 GSVGAVAVDEVPCAVAWSGAGGGPVRHAPPPRDAP 452
G G D P A +GA G H PPPR AP
Sbjct: 253 GEPGKDGEDGAPGAAGNAGAKGS-CDHCPPPRTAP 286
>AC006672-8|AAY43997.1| 125|Caenorhabditis elegans Hypothetical
protein K08D12.7 protein.
Length = 125
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 279 ARFTTRHLTAASYPWSAVASKNAGS-VGAVAVDEVPCAVAWSGAG 410
A T + SY AV G+ V ++AV+E P VA GAG
Sbjct: 23 AGLTRKRRADNSYGDEAVTPAGGGARVASMAVEEAPATVAPEGAG 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,063,956
Number of Sequences: 27780
Number of extensions: 208599
Number of successful extensions: 864
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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