Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L24
         (650 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1AG34 Cluster: Ded1-like DEAD-box RNA helicase; n=1; C...    55   1e-06
UniRef50_Q17CR5 Cluster: DEAD box ATP-dependent RNA helicase; n=...    50   6e-05
UniRef50_UPI0000E4A09E Cluster: PREDICTED: hypothetical protein;...    48   3e-04
UniRef50_Q7QDB7 Cluster: ENSANGP00000017541; n=1; Anopheles gamb...    46   0.001
UniRef50_Q9VHP0 Cluster: ATP-dependent RNA helicase bel; n=4; Pr...    44   0.002
UniRef50_O00571 Cluster: ATP-dependent RNA helicase DDX3X; n=74;...    44   0.004
UniRef50_Q1DGU8 Cluster: Catrin, putative; n=2; Culicidae|Rep: C...    35   1.9  
UniRef50_Q2QNM2 Cluster: Expressed protein; n=4; Magnoliophyta|R...    34   3.4  
UniRef50_A1RQW7 Cluster: Putative uncharacterized protein; n=2; ...    34   3.4  

>UniRef50_Q1AG34 Cluster: Ded1-like DEAD-box RNA helicase; n=1;
           Chironomus tentans|Rep: Ded1-like DEAD-box RNA helicase
           - Chironomus tentans (Midge)
          Length = 776

 Score = 55.2 bits (127), Expect = 1e-06
 Identities = 25/41 (60%), Positives = 33/41 (80%)
 Frame = +2

Query: 131 MSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQL 253
           M+N  N+NGTGLEQQ+AGLDL  +  KS+ +YIPPHLR ++
Sbjct: 1   MNNYANENGTGLEQQVAGLDLNER--KSSTKYIPPHLRGEI 39


>UniRef50_Q17CR5 Cluster: DEAD box ATP-dependent RNA helicase; n=2;
           Aedes aegypti|Rep: DEAD box ATP-dependent RNA helicase -
           Aedes aegypti (Yellowfever mosquito)
          Length = 625

 Score = 49.6 bits (113), Expect = 6e-05
 Identities = 29/63 (46%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
 Frame = +2

Query: 131 MSNVTNQNGTGLEQQLAGLDLQP--------QAPKSTGRYIPPHLRRQLQATSDQGEESK 286
           MSN  NQNGTGLEQQ AGLDLQ             S+ RY+PP LR         G E+ 
Sbjct: 1   MSNAINQNGTGLEQQFAGLDLQQSQCVQDSGNLKSSSARYVPPQLRSGRGGGGGGGPEND 60

Query: 287 RSS 295
             S
Sbjct: 61  NQS 63


>UniRef50_UPI0000E4A09E Cluster: PREDICTED: hypothetical protein;
           n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 146

 Score = 47.6 bits (108), Expect = 3e-04
 Identities = 23/38 (60%), Positives = 26/38 (68%)
 Frame = +2

Query: 131 MSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLR 244
           MSN TNQNG  L+QQ A +DL P A K    Y+PPHLR
Sbjct: 1   MSNGTNQNGPSLDQQFAAMDLMPGAKK----YVPPHLR 34


>UniRef50_Q7QDB7 Cluster: ENSANGP00000017541; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000017541 - Anopheles gambiae
           str. PEST
          Length = 771

 Score = 45.6 bits (103), Expect = 0.001
 Identities = 30/62 (48%), Positives = 34/62 (54%), Gaps = 16/62 (25%)
 Frame = +2

Query: 131 MSNVTNQNGTGLEQQLAGLDLQ-------------PQA--PK-STGRYIPPHLRRQLQAT 262
           MSN  NQNGTGLEQQ AGLDLQ             P++  PK   GRY+PP LR    + 
Sbjct: 1   MSNAINQNGTGLEQQFAGLDLQQKQQQLGGGGGSNPESGNPKHPAGRYVPPQLRECADSG 60

Query: 263 SD 268
            D
Sbjct: 61  GD 62


>UniRef50_Q9VHP0 Cluster: ATP-dependent RNA helicase bel; n=4;
           Protostomia|Rep: ATP-dependent RNA helicase bel -
           Drosophila melanogaster (Fruit fly)
          Length = 798

 Score = 44.4 bits (100), Expect = 0.002
 Identities = 27/52 (51%), Positives = 31/52 (59%), Gaps = 14/52 (26%)
 Frame = +2

Query: 131 MSNVTNQNGTGLEQQLAGLDLQ--------PQAPKST------GRYIPPHLR 244
           MSN  NQNGTGLEQQ+AGLDL         P   K++      G Y+PPHLR
Sbjct: 1   MSNAINQNGTGLEQQVAGLDLNGGSADYSGPITSKTSTNSVTGGVYVPPHLR 52


>UniRef50_O00571 Cluster: ATP-dependent RNA helicase DDX3X; n=74;
           Metazoa|Rep: ATP-dependent RNA helicase DDX3X - Homo
           sapiens (Human)
          Length = 662

 Score = 43.6 bits (98), Expect = 0.004
 Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
 Frame = +2

Query: 131 MSNVTNQNGTGLEQQLAGLDLQPQ------APKSTGRYIPPHLRRQ 250
           MS+V  +N  GL+QQ AGLDL         +  S GRYIPPHLR +
Sbjct: 1   MSHVAVENALGLDQQFAGLDLNSSDNQSGGSTASKGRYIPPHLRNR 46


>UniRef50_Q1DGU8 Cluster: Catrin, putative; n=2; Culicidae|Rep:
           Catrin, putative - Aedes aegypti (Yellowfever mosquito)
          Length = 256

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = +2

Query: 89  LEQSSQKNVPLGXNMSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSD 268
           L ++ ++N     N+ +++  N TG  Q    LD +P  PKS G+  P    RQ   TSD
Sbjct: 13  LNKAPRRNTT-ATNLDDISF-NDTGQTQDQ--LDNRPLLPKSLGQSTPDRKDRQKNGTSD 68

Query: 269 QGEESKR 289
            GE+S +
Sbjct: 69  GGEDSPK 75


>UniRef50_Q2QNM2 Cluster: Expressed protein; n=4; Magnoliophyta|Rep:
           Expressed protein - Oryza sativa subsp. japonica (Rice)
          Length = 191

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 173 QLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQGEESKRSSLXTRPS 313
           +L+G+D+ P  P ++   IP H  R+    +D GE+SK      +PS
Sbjct: 111 RLSGIDMMPPPPSTS---IPSHQERERNMAADGGEKSKEIDTPEKPS 154


>UniRef50_A1RQW7 Cluster: Putative uncharacterized protein; n=2;
           Pyrobaculum|Rep: Putative uncharacterized protein -
           Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)
          Length = 467

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 641 IGTLFSSWLRLFPAVIPWCRWFIILLTSH--VARPASVPFAFTIIPFVGFI 495
           IG   S W+R F  VI W  W   ++T +  +A   +  FAFT+  F+G +
Sbjct: 92  IGIKPSDWVRGF-TVIYWLWWICAIITGYKPIASVVTTEFAFTLALFIGIL 141


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 532,488,924
Number of Sequences: 1657284
Number of extensions: 9526032
Number of successful extensions: 27338
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 26499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27326
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)