Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L24
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.7  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   8.8  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   8.8  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 230 PPHLRRQLQATSDQGEESKRSSLXTRPS 313
           PPH +  +Q   +QG++   ++    PS
Sbjct: 203 PPHQQPPIQQQPNQGQQPPGNTAAALPS 230


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 230 PPHLRRQLQATSDQGEESKRSSLXTRPS 313
           PPH +  +Q   +QG++   ++    PS
Sbjct: 205 PPHQQPPIQQQPNQGQQPPGNTAAALPS 232


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = -1

Query: 548 RPASVPFAFTIIPFVGFIPTLWFAI 474
           RP+S+ F   I+    ++P + + +
Sbjct: 313 RPSSLRFCLNILSIFTYVPMILYCV 337


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = -1

Query: 548 RPASVPFAFTIIPFVGFIPTLWFAI 474
           RP+S+ F   I+    ++P + + +
Sbjct: 38  RPSSLRFCLNILSIFTYVPMILYCV 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,137
Number of Sequences: 336
Number of extensions: 2091
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)