Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L24
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   5.4  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    26   5.4  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.2  

>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 487 SVGMNPTNGMIVNANGTDAGLATCDVRRIMNHRHH 591
           SV  NP N  I+    TD  +A  D+R  +N R H
Sbjct: 286 SVAFNPHNDFILATCSTDKTIALWDLRN-LNQRLH 319


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 203 APKSTGRYIPPHLRRQLQATSDQG 274
           AP + G++IPP + ++L    D G
Sbjct: 189 APVNAGKFIPPGVGKRLATVDDSG 212


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
 Frame = +2

Query: 152 NGTGLEQ-----QLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQGEES 283
           NGTGL       Q  G DL+P +   T  Y     RR      D  EES
Sbjct: 420 NGTGLRSSQSSSQNRGFDLEPYSEVFTASYPRRQARRTRTIQLDSDEES 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,195
Number of Sequences: 5004
Number of extensions: 36305
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)