Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L24
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.48 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 626 SSWLRLFPAVIPWCRWFIILLTSHVARPASVP 531
           S+W R F A+I W  +FI++ T  +     VP
Sbjct: 399 SAW-RHFAAIIEWLSFFIVIFTYIIILITLVP 429


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 17/74 (22%), Positives = 34/74 (45%)
 Frame = +2

Query: 92   EQSSQKNVPLGXNMSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQ 271
            +Q+ Q+ + L   + N+   +G  +    AGL       K+TG  +   +      TS Q
Sbjct: 1234 QQTQQQPIILPSQLLNIKTLHGLKVIPTPAGL-------KTTGAAVYARVIAPTTITSSQ 1286

Query: 272  GEESKRSSLXTRPS 313
               +++ ++ T+PS
Sbjct: 1287 SPGNQQQTIQTQPS 1300


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 195 SPRLLRVLVATYPRICVGSCRQPLIKGK 278
           SPR  R+LVAT   +    C  PL+  K
Sbjct: 178 SPRRARLLVATVWILSFVICFPPLVGWK 205


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -3

Query: 345 PPNDERLSRDS---LGRVXKLERLDSSP*SE 262
           PPNDE +  DS    G + +   LDS+  S+
Sbjct: 195 PPNDEGIETDSDRRKGSIARCWSLDSTAASD 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,420
Number of Sequences: 438
Number of extensions: 3101
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)