Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L18
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   118   2e-28
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   117   7e-28
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   1.4  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   5.5  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    24   7.2  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   9.6  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    24   9.6  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    24   9.6  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  118 bits (285), Expect = 2e-28
 Identities = 52/84 (61%), Positives = 59/84 (70%)
 Frame = +2

Query: 29  MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
           MTKGT SFG R NK+HT+CRRCG  S+HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 209 XXXMRHLKIVRRRFRNGFKEGKPT 280
              M +LK V R F+NGF+ GKPT
Sbjct: 61  TGRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  117 bits (281), Expect = 7e-28
 Identities = 51/83 (61%), Positives = 58/83 (69%)
 Frame = +2

Query: 29  MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
           MTKGT SFG R NK+HT+CRRCG  S+HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 209 XXXMRHLKIVRRRFRNGFKEGKP 277
              M +LK V R F+NGF+ GKP
Sbjct: 61  TGRMSYLKKVHRSFKNGFRSGKP 83


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 237 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 124
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +2

Query: 65  NKTHTLCRRCGXSSYHIQKSKCAQCGYP 148
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 135 WAHFDF*M*YDDXPHLLHNVWVLFRRLPKLEVPFVI 28
           W+H D     D   H LHN W    R  K +  F++
Sbjct: 158 WSHDDLNELVDKSYHNLHNAWSQLSREAKDQWGFLL 193


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 76  YVMQKMWXIVISHSKIKMRPMWISCSKITIL 168
           + ++K W +  SHSK+   P   S  +I +L
Sbjct: 899 HFLEKQWTLYYSHSKLMFSP--FSSQRIILL 927


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 133 PMWISCSKITILPLVSEG*AQEDYW 207
           P W+SC+++ +L    +    +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 76  YVMQKMWXIVISHSKIKMR-PMWISCSKITILPLVSEG*AQEDYWN 210
           Y+M+++   +IS +  ++  P W S +  TI P+V +   +  YWN
Sbjct: 278 YLMEQLLRPLISRATFEVNIPAW-SRTIETIYPVVLKMCTKTKYWN 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,310,558
Number of Sequences: 5004
Number of extensions: 22788
Number of successful extensions: 44
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)