Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L13
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    55   8e-09
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    28   1.0  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    28   1.4  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   3.1  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   7.3  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    25   7.3  

>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 22/73 (30%), Positives = 47/73 (64%)
 Frame = +3

Query: 141 NQKMGAVVKYVIAGLXRYWLIHTDFWHTLSNRVXIATPLNSWKRLIEGVYLYDQNINPYE 320
           N+K+  +    I+   +++L +T     L  R+ ++TP++ + R+ EG+YLY+  ++PY 
Sbjct: 4   NEKLKLLGLLSISFFLQWYLANTWIAEFLYRRIEVSTPVSGFLRVREGLYLYENGLDPYS 63

Query: 321 GDAFHESPIVLVI 359
           G  F++SP++L++
Sbjct: 64  GGVFYQSPLLLIL 76


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 497 ITCVSXIKG-YGYDXKSVKRDI*ICSVCLFI*SILYIELCWDDNNS 631
           +TC+  I   Y  D + VK+D+  CS  ++   ++++  C   N+S
Sbjct: 72  VTCLDTIVSLYAVDNEEVKKDVISCSCTIY--PLVFLHCCTSPNDS 115


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 258 NSWKRLIEGVYLYDQNINPYEGDAFHESPIVLVIFHYLLKHVP 386
           N W  LI   Y+   +++  +  +  E P +++I H LLK  P
Sbjct: 183 NPWPELIN--YVKSMDLDNMDSSSLSEIPYIVLIIHVLLKVSP 223


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 222 TLSNRVXIATPL---NSWKRLIEGVYLYDQNINPYEGDAFHESPIVLVIFHYLLKHVPYS 392
           ++S R+ I   L   + WK    G  +++  I+P+E ++F   P V V+F   +K  P+ 
Sbjct: 134 SMSPRISIEEKLEIFSKWKYESPGNNVFEA-ISPHERESFPSEPQVSVLFTSSVKRSPHG 192

Query: 393 L 395
           +
Sbjct: 193 V 193


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/56 (21%), Positives = 21/56 (37%)
 Frame = +3

Query: 399  FIFSAMDLLTAYLLYKTSXGFVXIFLNCQXKYLSHVSXESKDMVMTXSQLKETSEY 566
            F+F   D ++A  +Y+       +  NC      ++S   K M +        S Y
Sbjct: 1247 FVFLLTDFMSAQTVYQIDIQVKELLTNCFYNVYENLSNHEKQMALVAMNAPSKSLY 1302


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 543 QLKETSEYVLSVYLFNPYSILNCVGM 620
           Q+K  SE+VL  +  NP S L+ +G+
Sbjct: 112 QIKYASEFVLEFFEQNPISQLSIIGV 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,646
Number of Sequences: 5004
Number of extensions: 49259
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)