Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L13
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714...    34   0.087
01_06_1488 + 37716986-37717076,37717424-37717558,37717755-377178...    32   0.46 
01_06_1214 + 35470688-35471340,35471617-35471701,35471750-354719...    31   0.81 
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    28   7.5  

>02_05_0359 -
           28269236-28269541,28270857-28270919,28271439-28271459,
           28271660-28271716,28271789-28271874,28271982-28272039,
           28272176-28272311,28272799-28273073,28273564-28273602,
           28274052-28274143,28274422-28274454,28275041-28275088,
           28275191-28275323
          Length = 448

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +3

Query: 225 LSNRVXIATPLNSWKRLIEGVYLYDQNINPYEG 323
           L++R  ++TPL S +RL EG +L   +++PY G
Sbjct: 29  LASRPEVSTPLTSIRRLAEGYWLKQASMSPYSG 61


>01_06_1488 +
           37716986-37717076,37717424-37717558,37717755-37717831,
           37717934-37718181,37718503-37718559,37718665-37718800,
           37718944-37719001,37719110-37719195,37719270-37719326,
           37719537-37719557,37720553-37720954,37721500-37721647,
           37721940-37722036,37724065-37724202,37724496-37724598,
           37724792-37724828,37724905-37725014,37725141-37725164
          Length = 674

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 10/25 (40%), Positives = 20/25 (80%)
 Frame = +3

Query: 576 VYLFNPYSILNCVGMTTTVLXNMLL 650
           +YL+NP++I+ CVG  T+ + N+++
Sbjct: 42  IYLWNPWAIVTCVGSCTSPIENLMV 66


>01_06_1214 +
           35470688-35471340,35471617-35471701,35471750-35471906,
           35472086-35472189
          Length = 332

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +3

Query: 219 HTLSNRVXIATPLNSWKRLIEGVYLYDQNINPYEGDAFHESPIVLVIF 362
           H++ N       ++ W+R +E  ++ + N   +E  AFH SP+++++F
Sbjct: 167 HSIKNVTVDGVEID-WEREVEEGWVKEINCLEWESFAFHPSPLIVLVF 213


>06_01_0090 -
           724296-724532,724756-724938,725038-725088,725520-725639,
           725738-725840,726106-726264,726728-726846,726891-727004,
           727119-727277,727404-727451,728464-728640,729064-729116,
           729549-729661,729793-729873,729966-730081,730786-730905,
           732321-732429,732593-732770,732852-732920,733102-733233,
           733657-733766,733843-734003,734081-734171,734258-734355,
           734499-734619,734732-734892,734985-735090,735142-735236,
           735828-735852,736008-736084,736196-736282,736372-736421,
           736558-736639,736735-736795,737064-737116,737206-737395,
           737472-737595,737860-737962,738064-738156,740344-740422,
           740508-740584,740915-741043,742614-742731,742816-742913,
           743457-743546,744998-745123,745238-745351,745488-745611,
           745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 327 AFHESPIVLVIFHYLLKHVP--YSLPFIFSAMDLLTAYLLYKTSXGFVXIFLNCQXKYLS 500
           AFH   I +     L+   P  + L FI   +D+L  +  YKT+ GF    L  +  +L+
Sbjct: 521 AFHHGKIDIGTIKILVSAGPAFFILNFIECCLDVLLMFGAYKTARGFALSRLVIRFIWLT 580

Query: 501 HVS 509
            VS
Sbjct: 581 AVS 583


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,821,548
Number of Sequences: 37544
Number of extensions: 266886
Number of successful extensions: 396
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)