Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L13
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.21 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 92  YYVPHTSFTLQILISN*SKNGCGCKICNSRLX*VLAYSYRLLAYTIQ 232
           YY+        ++I +    GC CK CNS+     A    L  YT++
Sbjct: 414 YYIEEYLPGNGVIIPDDPPIGCECKTCNSKTKCCFAQDDGLCPYTLK 460



 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 632 NCCCHPNTVQYRVWIK*ID 576
           N  C PN   Y VWI  +D
Sbjct: 579 NHSCDPNLAVYGVWINCLD 597


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 344 DSVSDFPLSFKTCP 385
           DSVSD+PL  K  P
Sbjct: 393 DSVSDYPLELKGSP 406


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 288 YLYDQNINPYEGDAFHESPIVLVIFHYLLKHVPY 389
           Y+ + N   Y+ D F E   +   ++Y+ + +PY
Sbjct: 210 YMREYNDPEYKLDYFMEDVELNAYYYYMREMLPY 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,597
Number of Sequences: 438
Number of extensions: 3213
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)