Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L09
         (647 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6L009 Cluster: Putative TonB-dependent receptor; n=1; ...    33   6.0  
UniRef50_Q5BXC7 Cluster: SJCHGC04725 protein; n=1; Schistosoma j...    33   7.9  

>UniRef50_A6L009 Cluster: Putative TonB-dependent receptor; n=1;
           Bacteroides vulgatus ATCC 8482|Rep: Putative
           TonB-dependent receptor - Bacteroides vulgatus (strain
           ATCC 8482 / DSM 1447 / NCTC 11154)
          Length = 565

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -1

Query: 284 YRTVKDVCPFWLLPPHARSSYSP*IIHLIFDHSPVAGSHFNSVGRYSV 141
           YR +    P+W L     S+Y P    L F  SPV G  FN  G Y +
Sbjct: 354 YRRLNAFSPYWSLNARMPSTYVPLNATLGFKASPVNGLWFNVFGGYRI 401


>UniRef50_Q5BXC7 Cluster: SJCHGC04725 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC04725 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 218

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 92  NGHSIPSASVGKKNYKQPSTYLHY*SAIRRRV 187
           NGH        K+NY++P T+ H  S++ RRV
Sbjct: 38  NGHEFSPGGFKKRNYQKPRTFKHIVSSVCRRV 69


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 526,376,566
Number of Sequences: 1657284
Number of extensions: 8772655
Number of successful extensions: 13063
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13063
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)