Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_L07
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac... 159 3e-40
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S... 159 3e-40
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19... 52 5e-08
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 27 1.3
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 27 2.3
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 3.1
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 3.1
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 26 4.1
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 5.4
>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 153
Score = 159 bits (385), Expect = 3e-40
Identities = 81/146 (55%), Positives = 96/146 (65%)
Frame = +1
Query: 22 LRSTKPSRKSVFSGSSLTGELISISSLHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKK 201
LR + R + G L +L+ +S+ EQL++L H GL ++K
Sbjct: 14 LRKKRSFRTFAYRGVELE-QLLDLSA-----EQLVDLFHARARRRMLRGLGPNASRFIRK 67
Query: 202 LRRXXXXXXXXXXXXIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEF 381
LR+ VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEF
Sbjct: 68 LRKAKTEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEF 127
Query: 382 SVTYKPVKHGRPGIGATHSSRFIPLK 459
S+TYKP KHGRPGIGATHSSRFIPLK
Sbjct: 128 SITYKPTKHGRPGIGATHSSRFIPLK 153
>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 159 bits (385), Expect = 3e-40
Identities = 81/146 (55%), Positives = 96/146 (65%)
Frame = +1
Query: 22 LRSTKPSRKSVFSGSSLTGELISISSLHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKK 201
LR + R + G L +L+ +S+ EQL++L H GL ++K
Sbjct: 15 LRKKRTFRTFAYRGVELE-QLLDLSA-----EQLVDLFHARARRRMLRGLGPNASRFIRK 68
Query: 202 LRRXXXXXXXXXXXXIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEF 381
LR+ VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEF
Sbjct: 69 LRKAKSEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEF 128
Query: 382 SVTYKPVKHGRPGIGATHSSRFIPLK 459
S+TYKP KHGRPGIGATHSSRFIPLK
Sbjct: 129 SITYKPTKHGRPGIGATHSSRFIPLK 154
>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
S19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 52.0 bits (119), Expect = 5e-08
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +1
Query: 250 VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 396
+KT +R+ I+P MVG+ ++NGK++ V+I +MIGH LGEF+ T K
Sbjct: 50 IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 312 NADN*TDHLGNDDHVSQVSLHDLWLXIR 229
N N T H+ ++ V +V++HD+W I+
Sbjct: 18 NVPNETKHIFDEISVKEVAVHDIWKRIQ 45
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 452 GMNLELCVAPIPGLPCFTGLYVTENS 375
G+N+ LCV PG P TG ++ENS
Sbjct: 241 GINVRLCVVINPGNP--TGACISENS 264
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = +1
Query: 1 RNKQET-WLRST-KPSRKSVFSGSSLTGEL 84
+NKQET L++T +P+ K + GSS TG++
Sbjct: 38 KNKQETAGLQTTSRPTAKQLVGGSSWTGKI 67
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 443 LELCVAPIPGLPCFTGLYVTE 381
LELC PG+P G++ E
Sbjct: 222 LELCTRMFPGIPIMAGIFADE 242
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 4.1
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Frame = +1
Query: 286 EMVGSIVGIYNGK-TFNQVEIKPEMI-----GHYLGEFSV-TYKPVKHGRPGIGATH 435
E+ + VG+YNGK F + + P+ + H L E ++ KP++ PG+ TH
Sbjct: 23 EITDATVGVYNGKIVFLEKSMTPKTLEEAKSHHLLKEATIHKLKPLQFMFPGLIDTH 79
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 316 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 402
N +TF+ E E + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,485
Number of Sequences: 5004
Number of extensions: 35056
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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