Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L07
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...   146   1e-35
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449...   136   1e-32
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415...    29   1.8  
05_01_0213 - 1606383-1606816,1607695-1608355                           27   9.6  

>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score =  146 bits (353), Expect = 1e-35
 Identities = 64/70 (91%), Positives = 69/70 (98%)
 Frame = +1

Query: 250 VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA 429
           V+THLRNMIIVPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPGIGA
Sbjct: 341 VRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGA 400

Query: 430 THSSRFIPLK 459
           THSSRFIPLK
Sbjct: 401 THSSRFIPLK 410



 Score = 35.9 bits (79), Expect = 0.021
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +3

Query: 45  KKRIFRKFTYRGVDLDQLL 101
           KKR FRK++YRGVDLD LL
Sbjct: 252 KKRTFRKYSYRGVDLDALL 270


>07_01_0604 -
           4491884-4491993,4493030-4493225,4494269-4494326,
           4494459-4494613,4495092-4495115,4495377-4495489,
           4499943-4500129
          Length = 280

 Score =  136 bits (328), Expect = 1e-32
 Identities = 70/132 (53%), Positives = 85/132 (64%)
 Frame = +1

Query: 13  ETWLRSTKPSRKSVFSGSSLTGELISISSLHMPNEQLMELMHXXXXXXXXXGLKRKPMAL 192
           ET + +    +K  F   S  G  +  + L M  + L++L           GLKRKPMAL
Sbjct: 114 ETEVAAGAQPKKRTFRKYSYRGVDLD-ALLDMSTDDLVQLFPARARRRFQRGLKRKPMAL 172

Query: 193 VKKLRRXXXXXXXXXXXXIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYL 372
           +KKLR+             V+THLRNMIIVPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL
Sbjct: 173 IKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYL 232

Query: 373 GEFSVTYKPVKH 408
            EFS++YKPVKH
Sbjct: 233 AEFSISYKPVKH 244


>06_01_0580 +
           4148969-4149101,4149394-4149546,4149682-4150095,
           4150218-4150294,4151479-4152699,4153057-4153128
          Length = 689

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +1

Query: 10  QETWLRSTKPSRKSVFSGSSLTGELIS----ISSLHMPNEQLME 129
           Q+ W+         VFSGSSLT  L S    + S  +P ++L+E
Sbjct: 375 QQNWIHQEGNGLSDVFSGSSLTNTLSSTLQRVPSSSLPPQELLE 418


>05_01_0213 - 1606383-1606816,1607695-1608355
          Length = 364

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 416 PVSVLHTAQGSFRSSXASKTTSRLSVT 496
           PVSVLH    S  SS +S TT+  + T
Sbjct: 176 PVSVLHAQHSSSSSSSSSTTTTTTTTT 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,047,784
Number of Sequences: 37544
Number of extensions: 241151
Number of successful extensions: 467
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)