Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L06
         (554 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                      113   9e-26
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)                    29   1.9  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  29   1.9  
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)          29   3.4  
SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)            28   5.9  
SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)                28   5.9  
SB_11363| Best HMM Match : Transposase_11 (HMM E-Value=2.3e-39)        28   5.9  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_14940| Best HMM Match : fn2 (HMM E-Value=2.5e-08)                   27   7.8  

>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score =  113 bits (272), Expect = 9e-26
 Identities = 55/91 (60%), Positives = 66/91 (72%)
 Frame = +1

Query: 43  MTNSKGYXPRHQXTCSLAGSAHMELFRSPRYMKVYKVGDIVXIRGNGAVQKGMPHKVYHG 222
           MTN+KGY    +   S     H  +     Y+K YKVGDIV ++ NGAVQKGMPHKVYHG
Sbjct: 423 MTNTKGYRRGTRYMFSKK-FRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHG 481

Query: 223 KTGRVYNVTAHALGVIVNKRVRGRIIPKRIN 315
           KTGRVYNVT  ALGV+VNK+V+G+I+ KRIN
Sbjct: 482 KTGRVYNVTKRALGVVVNKQVKGKILAKRIN 512


>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
          Length = 305

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 421 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 513
           VN  +   PP A + ++  ++PVL  P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 243  RDCSCSRCDCQQACSRKDYTEAHQYPC 323
            +D +C  CD  Q C   + T  HQ PC
Sbjct: 2330 QDPNCGWCDSAQQCMPGNQTRPHQEPC 2356


>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
          Length = 565

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 370 VKXNXRLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 507
           VK   R  +E +     +NL ++PA P K    +   EKPV   P P
Sbjct: 273 VKRTQRRQRELEEVADAINLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319


>SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1756

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +3

Query: 3    FLXPVKLCNTRLEDD-ELQGLPAAAPXHLFARR-FRTHGTIPLSTLHESVQSWRHCXHQR 176
            F  P+ + N +L D+ E + +          R+  R    IP+ T  +S  S+       
Sbjct: 816  FALPINILNAQLSDEGEYRCIADNGVSGGHPRQQIRVVVRIPVITSEQSSHSFNEGDQAS 875

Query: 177  QWCSSKGYATQSIPW 221
             +C++ GY T +I W
Sbjct: 876  LYCNATGYPTPNINW 890


>SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/82 (25%), Positives = 33/82 (40%)
 Frame = +1

Query: 169 IRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKC 348
           I G G+   GMP +      G+V ++   A GV++    R      ++   + H  HSK 
Sbjct: 103 IEGTGSYNGGMPQEDLRNTIGQVADL--GAAGVVMWGNRRDENTSPQVCKHINHYIHSKL 160

Query: 349 XQDFLXXVKXNXRLLKEAKAAG 414
              F+  +K       E K  G
Sbjct: 161 G-PFIHRMKTTAEKCSELKCRG 181


>SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 190 QKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEH 330
           ++G PH+ + G TGR       A+  + +K +  +++ +R NI + H
Sbjct: 108 KEGKPHENHSGLTGR-----RGAMRALASKDINAQLLKERFNINMPH 149


>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
          Length = 1139

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 183 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 278
           C+S    +      D+S VQ+DCS  R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767


>SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 670

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +1

Query: 73  HQXTCSLAGSAHMELFRSPRYMKV---YKVGDIVXIRGNGAVQKGMPHKVYHGKTGRVYN 243
           H+    L G    E  R P   ++   Y++ D   I  + A   G P +   GK+G+   
Sbjct: 439 HRLKLQLCGVPVKEFKRRPTLKQLQAEYRIIDGDAIHEDAAGNTGGPDR--RGKSGKQTV 496

Query: 244 VTAHALGVIV 273
           V A ALGVIV
Sbjct: 497 VIASALGVIV 506


>SB_11363| Best HMM Match : Transposase_11 (HMM E-Value=2.3e-39)
          Length = 402

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/81 (24%), Positives = 35/81 (43%)
 Frame = +3

Query: 120 PLSTLHESVQSWRHCXHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSRKDY 299
           P+S LH+   S       ++   S   + Q + +K RS+ +++   +R  C    S K Y
Sbjct: 199 PISNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHP-SPKIY 257

Query: 300 TEAHQYPC*ACQALQVXTRLP 362
           + + + P      L V  R P
Sbjct: 258 SASAKEPWVLATNLPVEIRTP 278


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = +3

Query: 168  HQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSRKDYTEAHQYPC 323
            H + WC++     +   W +     + C  S C    ACS+   T A  Y C
Sbjct: 1804 HNKPWCATTDDFDRDRLWDNMKVDFKPCDASPCRGNGACSQ--VTPAFTYTC 1853


>SB_14940| Best HMM Match : fn2 (HMM E-Value=2.5e-08)
          Length = 93

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = +3

Query: 168 HQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSRKDYTEAHQYPC 323
           H + WC++     +   W +     + C  S C    ACS+   T A  Y C
Sbjct: 30  HNKPWCATTDDFDRDRLWDNMKVDFKPCDASPCRGNGACSQ--VTPAFTYTC 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,510,082
Number of Sequences: 59808
Number of extensions: 340237
Number of successful extensions: 896
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)