Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_L06
(554 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 142 1e-34
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 142 1e-34
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 142 1e-34
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 142 1e-34
At5g25320.1 68418.m03004 ACT domain-containing protein contains ... 29 1.6
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ... 29 1.6
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 29 2.1
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 29 2.8
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 29 2.8
At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ... 29 2.8
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 29 2.8
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ... 29 2.8
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans... 28 4.8
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 28 4.8
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 27 6.4
At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein ... 27 8.4
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera... 27 8.4
At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein ... 27 8.4
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 27 8.4
At1g76990.3 68414.m08966 ACT domain containing protein low simil... 27 8.4
At1g76990.2 68414.m08965 ACT domain containing protein low simil... 27 8.4
At1g76990.1 68414.m08964 ACT domain containing protein low simil... 27 8.4
At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein ... 27 8.4
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 142 bits (345), Expect = 1e-34
Identities = 65/129 (50%), Positives = 90/129 (69%)
Frame = +1
Query: 133 YMKVYKVGDIVXIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRI 312
Y++ +KVGD V ++ NGA+ KGMPHK YHG+TGR++NVT A+GV VNK++ RII KRI
Sbjct: 30 YLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRI 89
Query: 313 NIRVEHVKHSKCXQDFLXXVKXNXRLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 492
++RVEHV+ S+C ++F K N L +AKA G+T++ KRQP PK +V G
Sbjct: 90 HVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLET- 148
Query: 493 LAPIPYEFV 519
+ PIPY+ V
Sbjct: 149 VTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 142 bits (345), Expect = 1e-34
Identities = 65/129 (50%), Positives = 90/129 (69%)
Frame = +1
Query: 133 YMKVYKVGDIVXIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRI 312
Y++ +KVGD V ++ NGA+ KGMPHK YHG+TGR++NVT A+GV VNK++ RII KRI
Sbjct: 30 YLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRI 89
Query: 313 NIRVEHVKHSKCXQDFLXXVKXNXRLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 492
++RVEHV+ S+C ++F K N L +AKA G+T++ KRQP PK +V G
Sbjct: 90 HVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLET- 148
Query: 493 LAPIPYEFV 519
+ PIPY+ V
Sbjct: 149 VTPIPYDVV 157
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 142 bits (344), Expect = 1e-34
Identities = 65/129 (50%), Positives = 89/129 (68%)
Frame = +1
Query: 133 YMKVYKVGDIVXIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRI 312
Y++ +KVGD V ++ NGA+ KGMPHK YHG+TGR++NVT A+GV VNK++ RII KRI
Sbjct: 30 YLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRI 89
Query: 313 NIRVEHVKHSKCXQDFLXXVKXNXRLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 492
++RVEHV+ S+C ++F K N L AKA G+T++ KRQP PK +V G
Sbjct: 90 HVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLET- 148
Query: 493 LAPIPYEFV 519
+ PIPY+ V
Sbjct: 149 VTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 142 bits (344), Expect = 1e-34
Identities = 65/129 (50%), Positives = 89/129 (68%)
Frame = +1
Query: 133 YMKVYKVGDIVXIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRI 312
Y++ +KVGD V ++ NGA+ KGMPHK YHG+TGR++NVT A+GV VNK++ RII KRI
Sbjct: 30 YLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRI 89
Query: 313 NIRVEHVKHSKCXQDFLXXVKXNXRLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 492
++RVEHV+ S+C ++F K N L AKA G+T++ KRQP PK +V G
Sbjct: 90 HVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLET- 148
Query: 493 LAPIPYEFV 519
+ PIPY+ V
Sbjct: 149 VTPIPYDVV 157
>At5g25320.1 68418.m03004 ACT domain-containing protein contains
Pfam ACT domain PF01842
Length = 500
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +3
Query: 183 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ----QACSRKDYTEAHQ 314
C +GY+ ++ KDR R+ D C+ D Q A R D +A Q
Sbjct: 291 CEERGYSIVTVKSKDRRRLMFDTICTLVDMQYVIFHAALRSDGADAFQ 338
>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
similar to potato PCP1 zinc finger protein, GenBank
accession number X82328 contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 402
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +3
Query: 171 QRQW-CS--SKGYATQSIPWKDRSRV--QRDCSCSRCDCQQACSRKDYTEAHQYPC 323
+++W C SK YA QS WK +++ RD RCDC SRKD H+ C
Sbjct: 156 EKKWKCEKCSKFYAVQS-DWKAHTKICGTRDY---RCDCGTLFSRKDTFITHRAFC 207
>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 446
Score = 29.1 bits (62), Expect = 2.1
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 171 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 323
+++W C SK YA S WK S++ C RCDC SRKD H+ C
Sbjct: 142 EKKWKCDKCSKKYAVMS-DWKAHSKI---CGTKEYRCDCGTLFSRKDSFITHRAFC 193
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 171 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 323
+++W C SK YA QS WK S++ C +CDC SR+D H+ C
Sbjct: 134 EKKWKCEKCSKKYAVQS-DWKAHSKI---CGTKEYKCDCGTLFSRRDSFITHRAFC 185
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 171 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 323
+++W C SK YA QS WK S++ C +CDC SR+D H+ C
Sbjct: 136 EKKWKCDKCSKKYAVQS-DWKAHSKI---CGTKEYKCDCGTLFSRRDSFITHRAFC 187
>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 516
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 171 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 323
+++W C SK YA QS WK S+ C RCDC SR+D H+ C
Sbjct: 156 EKKWKCEKCSKRYAVQS-DWKAHSKT---CGTKEYRCDCGTIFSRRDSYITHRAFC 207
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 171 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 323
+++W C SK YA QS WK S+ C RCDC SR+D H+ C
Sbjct: 154 EKKWKCDKCSKRYAVQS-DWKAHSKT---CGTKEYRCDCGTLFSRRDSFITHRAFC 205
>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
similar to zinc finger protein ID1 GB:AAC18941
GI:3170601 from [Zea mays] contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 467
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 171 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 323
+++W C SK YA QS WK S+ C RCDC SR+D H+ C
Sbjct: 155 EKKWKCDKCSKRYAVQS-DWKAHSKT---CGTKEYRCDCGTIFSRRDSYITHRAFC 206
>At2g13150.1 68415.m01450 expressed protein contains a bZIP
transcription factor basic domain signature (PDOC00036)
Length = 262
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 326 SMSSTPSAXKTSLXXSXXMXGY*RKPRLPARPST*RDSQLPLKLPTSSVELRNPS 490
S +STPS ++ S P L PS+ R + +PL P++SVE R+ S
Sbjct: 4 SDNSTPSRPRSITQPSLAFSSL---PPLSPSPSSSRRNSIPLMNPSASVESRDSS 55
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 145 YKVGDIVXIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN 276
Y+ G V + +G + G PHKV R+Y++ + ALG + N
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGN 162
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 196 GMPHKVYHGKTGRVYNVTAHALGVIVNK 279
G P K Y+G GR+ AHAL NK
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNK 209
>At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 466
Score = 27.1 bits (57), Expect = 8.4
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 171 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 323
+++W C +K YA QS WK S+ C RCDC SR+D H+ C
Sbjct: 139 EKKWTCEKCAKRYAVQS-DWKAHSKT---CGTREYRCDCGTIFSRRDSFITHRAFC 190
>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 450
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 312 DALRYNPSANTLVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNV 157
+ L++ L N S V + + FVW LLN SDV+ V
Sbjct: 335 EVLKHQAIGGFLTHNGWNSTVESVFEGVPMICMPFVWDQLLNARFVSDVWMV 386
>At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 503
Score = 27.1 bits (57), Expect = 8.4
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 171 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 323
+++W C SK YA QS WK ++ C +CDC SRKD H+ C
Sbjct: 156 EKKWKCEKCSKKYAVQS-DWKAHAKT---CGTREYKCDCGTLFSRKDSFITHRAFC 207
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Frame = +3
Query: 255 CSRCD----CQQACSRKDYTEAHQYPC 323
CSRC C C R D++ HQ C
Sbjct: 72 CSRCKSVRYCSAECQRSDWSSGHQRNC 98
>At1g76990.3 68414.m08966 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 183 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 275
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At1g76990.2 68414.m08965 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 183 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 275
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At1g76990.1 68414.m08964 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 183 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 275
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein
contains Zinc finger,C2H2 type,domain contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 506
Score = 27.1 bits (57), Expect = 8.4
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 171 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 323
+++W C +K YA QS WK S+ C RCDC SR+D H+ C
Sbjct: 143 EKKWKCEKCAKRYAVQS-DWKAHSKT---CGTREYRCDCGTIFSRRDSFITHRAFC 194
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,133,810
Number of Sequences: 28952
Number of extensions: 218343
Number of successful extensions: 602
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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