Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L05
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803...   115   2e-26
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603...   113   4e-26
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912...    27   4.3  
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511...    27   4.3  
05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188...    27   7.6  
02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776     27   7.6  

>05_07_0070 +
           27479654-27479672,27479864-27479922,27480339-27480378,
           27480477-27480565,27481065-27481147,27481219-27481282
          Length = 117

 Score =  115 bits (276), Expect = 2e-26
 Identities = 51/89 (57%), Positives = 60/89 (67%)
 Frame = +1

Query: 52  KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 231
           ++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR  VGIW CK 
Sbjct: 25  ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84

Query: 232 CKRTVXXGAWVFXXXXXXXXXXXVRRLRE 318
           C +    GA+             +RRLRE
Sbjct: 85  CGKVKAGGAYTMNTASAVTVRSTIRRLRE 113


>01_06_0260 -
           27959188-27959251,27959342-27959424,27960220-27960308,
           27960388-27960427,27960938-27960981,27961240-27961288
          Length = 122

 Score =  113 bits (273), Expect = 4e-26
 Identities = 51/86 (59%), Positives = 58/86 (67%)
 Frame = +1

Query: 61  KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKR 240
           KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR  VGIW CK C +
Sbjct: 33  KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92

Query: 241 TVXXGAWVFXXXXXXXXXXXVRRLRE 318
               GA+             +RRLRE
Sbjct: 93  VKAGGAYTMNTASAVTVRSTIRRLRE 118


>12_02_0648 +
           21490202-21490296,21490547-21490634,21491216-21491260,
           21491355-21491387,21491480-21491557,21491647-21491690,
           21491765-21491805,21492102-21492184,21492261-21492352,
           21492468-21492537,21492838-21492876,21493670-21493687,
           21494586-21494713,21495235-21495358,21495585-21495716,
           21496092-21496223,21496582-21496665
          Length = 441

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 142 EVTQHAKYTCSFCGKDAM 195
           E+ +H KYTC  C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211


>09_06_0303 -
           22149214-22149474,22150099-22150236,22150856-22151100,
           22151344-22151809
          Length = 369

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
 Frame = +1

Query: 25  STFVSERFTKMAKRTKKVG-ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKR 201
           S  +  RF       ++V     K G  Y   L K          AKYT    G  A  R
Sbjct: 60  SDMMKSRFEAFKANARQVNEFNKKEGMSYTLGLNKFSDMSYEEFAAKYTGGMPGSIADDR 119

Query: 202 SCVGIWSCKRCKRTV 246
           S  G  SCK  ++ V
Sbjct: 120 SSAGAVSCKLREKNV 134


>05_04_0331 +
           20317482-20318174,20318518-20318685,20318773-20318895,
           20319094-20319165,20321217-20321431,20321521-20321593,
           20322092-20322568,20322970-20323077,20323184-20323192,
           20323193-20323552
          Length = 765

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 2   DNCFSFLCQLLYRRGLPKWPNVPKRLELLANMAHVTVPLYV--KWSKRW 142
           D C++   ++  R  +PK   +PKR+E+L     + +   V   WS  W
Sbjct: 293 DTCYAKFVEVPERIEVPKGTEMPKRIEVLERTEVIEILHLVCHLWSLDW 341


>02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776
          Length = 80

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 16  FSLSTFVSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAK 162
           + L  ++   +  + K   + G+T +  +RY   LR+ ++K+EV    K
Sbjct: 11  YELEVYMLTIYLLLHKNQVRHGVTARRTSRYYVVLRRELRKLEVVGKVK 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,626,469
Number of Sequences: 37544
Number of extensions: 162994
Number of successful extensions: 376
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)