Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L05
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)         116   5e-27
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si...   109   5e-25
At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identic...    30   0.52 
At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identic...    30   0.52 
At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identic...    30   0.52 
At4g28730.1 68417.m04109 glutaredoxin family protein contains gl...    27   3.7  

>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
          Length = 92

 Score =  116 bits (280), Expect = 5e-27
 Identities = 52/88 (59%), Positives = 60/88 (68%)
 Frame = +1

Query: 55  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 234
           MAKRTKKVGI GKYGTRYGAS+RK +KKMEV+QH+KY C FCGK  +KR  VGIW CK C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 235 KRTVXXGAWVFXXXXXXXXXXXVRRLRE 318
            +    GA+             +RRLRE
Sbjct: 61  GKVKAGGAYTMNTASAVTVRSTIRRLRE 88


>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
           similar to putative 60S ribosomal protein L37a
           GB:AAD28753 [Gossypium hirsutum]
          Length = 92

 Score =  109 bits (263), Expect = 5e-25
 Identities = 50/88 (56%), Positives = 57/88 (64%)
 Frame = +1

Query: 55  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 234
           M KRTKK  I GKYGTRYGASLRK +KKMEV+QH KY C FCGK ++KR  VGIW CK C
Sbjct: 1   MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 235 KRTVXXGAWVFXXXXXXXXXXXVRRLRE 318
            +    GA+             +RRLRE
Sbjct: 61  GKVKAGGAYTMNTASAVTVRSTIRRLRE 88


>At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identical
           to purple acid phosphatase (PAP13) [Arabidopsis
           thaliana] GI:20257489; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 545

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 39  GEVYQNGQTYQKGWNYW 89
           G  Y +G+TYQ  W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277


>At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identical
           to purple acid phosphatase (PAP13) [Arabidopsis
           thaliana] GI:20257489; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 428

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 39  GEVYQNGQTYQKGWNYW 89
           G  Y +G+TYQ  W+YW
Sbjct: 180 GSCYSSGETYQPRWDYW 196


>At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identical
           to purple acid phosphatase (PAP13) [Arabidopsis
           thaliana] GI:20257489; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 516

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 39  GEVYQNGQTYQKGWNYW 89
           G  Y +G+TYQ  W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277


>At4g28730.1 68417.m04109 glutaredoxin family protein contains
           glutaredoxin domain, Pfam:PF00462
          Length = 174

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 85  TGKYGTRYGASLRKMVKKMEVTQHAKYTCSFC 180
           +  +G+R   S+RK V +  V  ++K  CS+C
Sbjct: 62  SSSFGSRMEESIRKTVTENTVVIYSKTWCSYC 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,119,735
Number of Sequences: 28952
Number of extensions: 137206
Number of successful extensions: 384
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)