Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L02
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...   103   2e-23
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    26   4.1  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   7.1  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   9.4  
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   9.4  

>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score =  103 bits (247), Expect = 2e-23
 Identities = 60/152 (39%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
 Frame = +3

Query: 195 KTKRGNILKIVREHYLRDDLLCGSAACNTC----PHKDDELVLETS-PKSPCALFDFPH- 356
           +  RG + K+VRE YLR+D+ C S AC  C    P      VLE    + P  L  F H 
Sbjct: 24  RATRGKVQKVVREQYLRNDIPCQSRACPLCRSKLPKDSRGNVLEPILSEKPMFLEKFGHH 83

Query: 357 YLXLDTNVVLHQIXVLEE-DALTNVIILQTVLEEVKHQNTAVFXRLLDIISNKKRKFYSF 533
           YL  D+N+  H I  LE  +   +VIILQTV  E+  ++  ++ R+  +   K ++F  F
Sbjct: 84  YLIPDSNIFYHCIDALEHPNNFFDVIILQTVFSEISSKSIPLYNRMKRLCQEKTKRFTPF 143

Query: 534 VNEHHXDTYIXRSPGEKQNDRNDRSIRKATSW 629
            NE   DT++ R   E  NDRNDR+IR A SW
Sbjct: 144 SNEFFVDTFVERLDDESANDRNDRAIRNAASW 175


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
 Frame = +3

Query: 174 TTKTFLTKTKRGNILKIVREHYLRDDLLCGSAACNTCPHKDDELVLETSPKSPCALFDFP 353
           T K+   +  R N+      + L D++ CGS+ACN     + ++    S KS   L  F 
Sbjct: 74  TEKSDYMRFYRLNLFNKECRYNLDDNVACGSSACNVLVTDEQDVPEVWSSKSLGKLEGF- 132

Query: 354 HYLXLDTNVVLHQIXVLEE-DALTNVIILQTVLEEVKHQ 467
               L   +V     V+E  D ++   +L+  L++  HQ
Sbjct: 133 -MPELSRQIVETDRSVMEHVDKISQSCLLER-LDDEAHQ 169


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 340 KAHGDLGEVSNTNSSSLCGHVLHAADPHNKS 248
           + + ++G  SNTN+ SL G  +H     NKS
Sbjct: 211 RVYANIGVSSNTNTKSLFGLCVHNPVDLNKS 241


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 304 WYWRPLPNLHVLCLISHIIXYWI 372
           WYWR  P++   C IS+   Y++
Sbjct: 165 WYWRVEPDVAFTCDISYDPFYYM 187


>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
 Frame = -1

Query: 248 VTQVMFSYN-LQY-----VTTLSFGKKGFCSPHFICVE 153
           + Q  F YN LQY      T L    KGF   HF+CV+
Sbjct: 119 IVQKRFHYNELQYGAALYKTGLLKNPKGFIHIHFVCVD 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,585
Number of Sequences: 5004
Number of extensions: 51640
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)