Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L02
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0207 - 1633177-1633372,1633623-1633688,1633778-1633859,163...   156   1e-38
09_02_0013 + 2968779-2969772,2969801-2969919,2970012-2970179           29   4.2  
05_04_0286 + 19833114-19834053,19834149-19834165                       29   4.2  
12_01_0839 + 7833111-7833380,7833925-7834161                           28   5.6  
06_01_0635 + 4623223-4623380,4623529-4623724,4624379-4624894,462...    27   9.7  

>03_01_0207 -
           1633177-1633372,1633623-1633688,1633778-1633859,
           1633942-1634037,1634413-1634518,1634602-1634661,
           1635114-1635234,1635929-1636040,1636118-1636217,
           1636328-1636382,1636489-1636595,1636798-1636850,
           1636989-1637114,1637909-1638065,1638226-1638421,
           1638917-1639073,1639139-1639379,1639475-1639605,
           1639704-1639826,1639929-1639984,1640610-1640767,
           1640847-1640984,1641070-1641123
          Length = 896

 Score =  156 bits (379), Expect = 1e-38
 Identities = 76/159 (47%), Positives = 104/159 (65%)
 Frame = +3

Query: 168 MWTTKTFLTKTKRGNILKIVREHYLRDDLLCGSAACNTCPHKDDELVLETSPKSPCALFD 347
           M  +KTF+ KT+ G + K+VREHYLRDD+ CG+A+C+TC   +  L  + +         
Sbjct: 1   MLQSKTFVKKTRAGRVQKVVREHYLRDDISCGAASCSTCGAVEHPLSADAAA-------- 52

Query: 348 FPHYLXLDTNVVLHQIXVLEEDALTNVIILQTVLEEVKHQNTAVFXRLLDIISNKKRKFY 527
               L +DTNVVLHQI +LE  A+ +V++L  VL+EVK++N AVF R+  + SNK R+F+
Sbjct: 53  ---ILVVDTNVVLHQIDLLENPAIDDVVLLSVVLDEVKNKNLAVFNRIKALCSNKARRFF 109

Query: 528 SFVNEHHXDTYIXRSPGEKQNDRNDRSIRKATSWVRISL 644
            F NEHH DTY+    GE  NDRNDR+IR AT W +  L
Sbjct: 110 VFTNEHHRDTYVKEMVGESPNDRNDRAIRVATRWYQSHL 148


>09_02_0013 + 2968779-2969772,2969801-2969919,2970012-2970179
          Length = 426

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 492 LDIISNKKRKFYSFVNEH---HXDTYIXRSPGEKQNDRNDRSIRKATSWVRISL 644
           LD++S+++R+ Y+ +++    H   Y      +   D   RSIRKA  W R ++
Sbjct: 16  LDLLSDREREAYNMLSDREYAHTREYSPELLKKIGMDVEFRSIRKAVGWQRFAV 69


>05_04_0286 + 19833114-19834053,19834149-19834165
          Length = 318

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 355 CGKSNKAHGDLGEVSNTNSSSLCGHVLHAADPHNKSS 245
           CG    +HGDL    + NS+S C     AA P+  S+
Sbjct: 262 CGHDGDSHGDLCLCGDWNSTSNCDSSADAARPNAASA 298


>12_01_0839 + 7833111-7833380,7833925-7834161
          Length = 168

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 253 YCADLQHVTHVHTKMMNWYWRPLPNLHV-LCLISHIIXYWILMLCYIKXM 399
           Y  +LQ      +  M W WRP+   H  +C I  +  ++ L   ++K M
Sbjct: 59  YSQNLQTAVWESSLSMIWLWRPIAPRHAPICWIVEVRMFYDLRHIFLKAM 108


>06_01_0635 +
           4623223-4623380,4623529-4623724,4624379-4624894,
           4626212-4626276,4626387-4626453
          Length = 333

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 231 EHYLRDDLLCGSAACNTCPHKDDELVLETSPKSPCAL 341
           E  + DDL CGS   +     +D ++LE +P  P  L
Sbjct: 200 ERRMYDDLWCGSHDQSGIDDSEDVVILEDTPNLPTQL 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,111,484
Number of Sequences: 37544
Number of extensions: 286057
Number of successful extensions: 663
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)