Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L02
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56986| Best HMM Match : Peptidase_M50 (HMM E-Value=3.8)             30   1.9  
SB_28869| Best HMM Match : AMP-binding (HMM E-Value=0)                 29   3.3  
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 29   4.3  
SB_50513| Best HMM Match : Lig_chan (HMM E-Value=0.0083)               28   5.7  
SB_24992| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_31893| Best HMM Match : I-set (HMM E-Value=2e-22)                   28   5.7  
SB_21012| Best HMM Match : A_amylase_inhib (HMM E-Value=7.9)           28   5.7  
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_23249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_56986| Best HMM Match : Peptidase_M50 (HMM E-Value=3.8)
          Length = 216

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
 Frame = +1

Query: 271 HVTHVHTKM---MNWYWRPLPNLHVLCLISHI---IXYWIL 375
           HV+ +H K+   MNWY  PL  LH++   S +   + YW++
Sbjct: 106 HVSPLHVKVSEPMNWYHYPLWLLHIVAANSAVAVCLVYWMI 146


>SB_28869| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 561

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 348 FPHYLXLDTNVVLHQIXVLEEDALTNVIIL 437
           FP  L LD++++   + V EE+ +TN I+L
Sbjct: 256 FPPRLSLDSHMIGAMLGVFEEEKVTNAIVL 285


>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 373  VSNXR*CGKSNKAHGDLGEVSNTNSSSLCGHVLHAADPHNKSS 245
            VSN R  G SN A   LG+      +S  G ++   + H K+S
Sbjct: 1192 VSNARRDGDSNPALKQLGDTYKLKGNSFYGKMIEDLEKHTKTS 1234


>SB_50513| Best HMM Match : Lig_chan (HMM E-Value=0.0083)
          Length = 417

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 515 LFVGNYIQQSXENCSILMFHFLK 447
           + V NY QQ   +CS++++ F+K
Sbjct: 32  MIVNNYFQQDSSSCSLIVYIFVK 54


>SB_24992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 355 CGKSNKAHGDLGEVSNTNSSSLCGHVLHAADPHNKSSRK 239
           CG  N AH   G  S   + ++C   L  AD  N+S RK
Sbjct: 6   CGGGNGAHALAGVASADPNINVCVFTLSNADRWNESMRK 44


>SB_31893| Best HMM Match : I-set (HMM E-Value=2e-22)
          Length = 767

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 380 CVTSNXCFGGRCFD*CYH 433
           CVT++ CFG    D CYH
Sbjct: 719 CVTTHVCFGDYANDCCYH 736


>SB_21012| Best HMM Match : A_amylase_inhib (HMM E-Value=7.9)
          Length = 129

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 380 CVTSNXCFGGRCFD*CYH 433
           CVT++ CFG    D CYH
Sbjct: 81  CVTTHVCFGDYANDCCYH 98


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 432 ILQTVLEEVKHQNTAVFXRLLDII 503
           +LQTV+    H+N AVF   L+I+
Sbjct: 492 LLQTVMRRTHHENRAVFKNNLEIV 515


>SB_23249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 432 ILQTVLEEVKHQNTAVFXRLLDII 503
           +LQTV+    H+N AVF   L+I+
Sbjct: 64  LLQTVMRRTHHENRAVFKNNLEIV 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,319,374
Number of Sequences: 59808
Number of extensions: 351871
Number of successful extensions: 787
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)