Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L02
         (647 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052150-1|AAK93574.1|  982|Drosophila melanogaster SD10981p pro...   187   1e-47
AJ276897-1|CAC35051.1|  983|Drosophila melanogaster putative exo...   187   1e-47
AE014297-3526|AAF56281.1|  982|Drosophila melanogaster CG6413-PA...   187   1e-47
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    30   3.1  
AY058276-1|AAL13505.1|  399|Drosophila melanogaster GH02863p pro...    29   5.4  
AE013599-207|AAM70815.1|  440|Drosophila melanogaster CG3270-PA ...    29   5.4  

>AY052150-1|AAK93574.1|  982|Drosophila melanogaster SD10981p
           protein.
          Length = 982

 Score =  187 bits (455), Expect = 1e-47
 Identities = 88/154 (57%), Positives = 108/154 (70%)
 Frame = +3

Query: 168 MWTTKTFLTKTKRGNILKIVREHYLRDDLLCGSAACNTCPHKDDELVLETSPKSPCALFD 347
           M T + F  KTKRGNILKIVREHYLRDD+ CGS  C  C  +++   L +   +   LF 
Sbjct: 1   MQTLREFTRKTKRGNILKIVREHYLRDDIGCGSELCREC-FQNEVYQLTSQHANKSTLFK 59

Query: 348 FPHYLXLDTNVVLHQIXVLEEDALTNVIILQTVLEEVKHQNTAVFXRLLDIISNKKRKFY 527
           FPHYL LDTNVVL QI VLEED L NV++L TVL EVKH+++A++ R  +I+ ++ R FY
Sbjct: 60  FPHYLVLDTNVVLDQIDVLEEDVLRNVVVLTTVLNEVKHRSSAIYKRFNEIVHDRTRNFY 119

Query: 528 SFVNEHHXDTYIXRSPGEKQNDRNDRSIRKATSW 629
            FVNEHH +TY  R P E  NDRNDR+IR AT W
Sbjct: 120 VFVNEHHKETYADREPDETANDRNDRAIRLATKW 153


>AJ276897-1|CAC35051.1|  983|Drosophila melanogaster putative
           exoribonuclease DIS3 protein.
          Length = 983

 Score =  187 bits (455), Expect = 1e-47
 Identities = 88/154 (57%), Positives = 108/154 (70%)
 Frame = +3

Query: 168 MWTTKTFLTKTKRGNILKIVREHYLRDDLLCGSAACNTCPHKDDELVLETSPKSPCALFD 347
           M T + F  KTKRGNILKIVREHYLRDD+ CGS  C  C  +++   L +   +   LF 
Sbjct: 1   MQTLREFTRKTKRGNILKIVREHYLRDDIGCGSELCREC-FQNEVYQLTSQHANKSTLFK 59

Query: 348 FPHYLXLDTNVVLHQIXVLEEDALTNVIILQTVLEEVKHQNTAVFXRLLDIISNKKRKFY 527
           FPHYL LDTNVVL QI VLEED L NV++L TVL EVKH+++A++ R  +I+ ++ R FY
Sbjct: 60  FPHYLVLDTNVVLDQIDVLEEDVLRNVVVLTTVLNEVKHRSSAIYKRFNEIVHDRTRNFY 119

Query: 528 SFVNEHHXDTYIXRSPGEKQNDRNDRSIRKATSW 629
            FVNEHH +TY  R P E  NDRNDR+IR AT W
Sbjct: 120 VFVNEHHKETYADREPDETANDRNDRAIRLATKW 153


>AE014297-3526|AAF56281.1|  982|Drosophila melanogaster CG6413-PA
           protein.
          Length = 982

 Score =  187 bits (455), Expect = 1e-47
 Identities = 88/154 (57%), Positives = 108/154 (70%)
 Frame = +3

Query: 168 MWTTKTFLTKTKRGNILKIVREHYLRDDLLCGSAACNTCPHKDDELVLETSPKSPCALFD 347
           M T + F  KTKRGNILKIVREHYLRDD+ CGS  C  C  +++   L +   +   LF 
Sbjct: 1   MQTLREFTRKTKRGNILKIVREHYLRDDIGCGSELCREC-FQNEVYQLTSQHANKSTLFK 59

Query: 348 FPHYLXLDTNVVLHQIXVLEEDALTNVIILQTVLEEVKHQNTAVFXRLLDIISNKKRKFY 527
           FPHYL LDTNVVL QI VLEED L NV++L TVL EVKH+++A++ R  +I+ ++ R FY
Sbjct: 60  FPHYLVLDTNVVLDQIDVLEEDVLRNVVVLTTVLNEVKHRSSAIYKRFNEIVHDRTRNFY 119

Query: 528 SFVNEHHXDTYIXRSPGEKQNDRNDRSIRKATSW 629
            FVNEHH +TY  R P E  NDRNDR+IR AT W
Sbjct: 120 VFVNEHHKETYADREPDETANDRNDRAIRLATKW 153


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
            protein.
          Length = 23015

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 380  CVTSNXCFGGRCFD*CYHFTN-CT 448
            C+    C GG+C   C +FTN CT
Sbjct: 8137 CLDEQTCIGGQCISPCEYFTNLCT 8160


>AY058276-1|AAL13505.1|  399|Drosophila melanogaster GH02863p
           protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 237 YLRDDLLCGSAACNTCPHKDDELVLET 317
           Y R D LCG+  C   P++D+E   ET
Sbjct: 262 YFRRDGLCGNFLCGRSPNEDEEPECET 288


>AE013599-207|AAM70815.1|  440|Drosophila melanogaster CG3270-PA
           protein.
          Length = 440

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 237 YLRDDLLCGSAACNTCPHKDDELVLET 317
           Y R D LCG+  C   P++D+E   ET
Sbjct: 303 YFRRDGLCGNFLCGRSPNEDEEPECET 329


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,082,864
Number of Sequences: 53049
Number of extensions: 513812
Number of successful extensions: 1160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)