Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L01
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...   192   4e-50
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...   166   2e-42
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    83   2e-17
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   1.7  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    27   1.7  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.2  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    26   3.9  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    25   6.8  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.0  

>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score =  192 bits (468), Expect = 4e-50
 Identities = 97/147 (65%), Positives = 116/147 (78%)
 Frame = +3

Query: 99  PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 278
           P+Y PFFGVMG  +AI+F++ GAAYGTAK+G GI+AM V+RP+LI+K+ IPVVMAGIIAI
Sbjct: 7   PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66

Query: 279 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLXXXXXXXXXXXXRVRGTAQQP 458
           YGLVV+VLI+G L++  +  LY GFI LGAGL+VG +GL             VRGTAQQP
Sbjct: 67  YGLVVSVLISGNLKQILS--LYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQP 124

Query: 459 XLFVGMILILIFAEVLGLYGLIVAIYL 539
            LFV MILILIFAEVLGLYGLIVA+ L
Sbjct: 125 RLFVAMILILIFAEVLGLYGLIVALLL 151


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score =  166 bits (404), Expect = 2e-42
 Identities = 80/147 (54%), Positives = 103/147 (70%)
 Frame = +3

Query: 99  PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 278
           PIY  FFG  G  ++++FS LGA YGTA +G GIAA+   RPE++MKS+IPVVM+GII +
Sbjct: 7   PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66

Query: 279 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLXXXXXXXXXXXXRVRGTAQQP 458
           YGLV++VLIAG +    +Y L+ GFIHL AGLAVG +G+             V+   +Q 
Sbjct: 67  YGLVMSVLIAGDMSPDNDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQD 126

Query: 459 XLFVGMILILIFAEVLGLYGLIVAIYL 539
            +FV M+LILIFAEVLGLYGLIV + L
Sbjct: 127 RIFVSMVLILIFAEVLGLYGLIVGLIL 153


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 83.4 bits (197), Expect = 2e-17
 Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 6/147 (4%)
 Frame = +3

Query: 117 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 296
           +G++G AS + F  +GAA+G    GT I   +V  P +  K++I ++   ++AIY L++A
Sbjct: 45  WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104

Query: 297 VLIAGALQE--PANY----PLYKGFIHLGAGLAVGFSGLXXXXXXXXXXXXRVRGTAQQP 458
           ++ +  + +  PA +      Y GF     G+ VG   L                 AQ  
Sbjct: 105 IVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGITGSSAALADAQDA 164

Query: 459 XLFVGMILILIFAEVLGLYGLIVAIYL 539
            LFV ++++ IF  VLGL+GLIV + +
Sbjct: 165 SLFVKVLVVEIFGSVLGLFGLIVGLLI 191


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 464 IRRNDSYSYFR*SIGSLRTYRRHLPVHKINALNTHHSRRPCSEP 595
           I  +D  + F  S+G ++ + +  P HK+  L+  +S +P S+P
Sbjct: 76  INADDDLTEFYKSLGEIQEFHKKYPDHKVEDLSQLYSIKP-SQP 118


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = +3

Query: 102 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 281
           +YGPF+       A+ FS     Y    +G G +  S+       K +I    A II  Y
Sbjct: 87  LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSI-------KKLISA--ASIIYGY 137

Query: 282 GLVVAVLIAGAL 317
             ++AVL+ G L
Sbjct: 138 TTIIAVLLWGIL 149


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
 Frame = +3

Query: 78   NKMAENNP---IYGPFFG-VMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR-PELIMKS 242
            +K+A ++P   I   F+G ++G    + F+ +   +  ++ G      S      LI+ S
Sbjct: 1424 DKIAMDSPRARITTMFYGEILGPLGTLFFTCIPFLFINSQPGNDDETQSTNAFIRLIIMS 1483

Query: 243  IIPVVMAGIIAIYGLVVAVLIAGALQEPA-NYPLY 344
            + P+V++ IIA +   + +++   L + +  Y +Y
Sbjct: 1484 VAPLVLSAIIAFFFFCLGIMLRPILGDRSKTYGVY 1518


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 356 DEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRND 243
           DEPF+K     +L+  SN++S+   VD N+    D +D
Sbjct: 48  DEPFLKSKYMDILQKISNRESNVINVDLNDLYEFDPSD 85


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 243 IIPVVMAGIIAIYGLVVAVLIAGAL 317
           II   +AG+IA + +++   IAG +
Sbjct: 193 IITATIAGVIAAFSVIITATIAGVI 217


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 502 YWVFTDLSSPSTCTQNKRPEHTPLPSP 582
           YW +T  +SP+   +N R    P P P
Sbjct: 497 YWYYTVFNSPTIIEKNFRQSVGPKPIP 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,223
Number of Sequences: 5004
Number of extensions: 53454
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)