Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K24
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.11c |||transcription factor TFIIA complex small subunit ...    97   2e-21
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    27   2.0  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   6.1  

>SPCC553.11c |||transcription factor TFIIA complex small subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 107

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 48/98 (48%), Positives = 67/98 (68%)
 Frame = +3

Query: 129 HINLYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAG 308
           +  LYR + I  +L ++L +LI  G+I+P LA+KVL  FDKS+ +AL+  V+SRLTFK G
Sbjct: 4   YYELYRRSRI--SLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFK-G 60

Query: 309 KLNTYRFCDNVWTFMLNDVEFREVQELAXVEKVKIVXC 422
            L+TYRFCD VWTF++ +  FR   E     K++IV C
Sbjct: 61  HLDTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVAC 98


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 138 LYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTF 299
           LY+     N + + L ++ QYG+ +  L    L  +DK I ++    +K+R  F
Sbjct: 226 LYKKPPSSNGVLKPLKDVFQYGRCSSLLVRSQLDCYDKKIPESGVFDLKTRAVF 279


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 451  YLRSSTFLPSHXTILTFSTLANSCTSRNSTSFNIK-VHTLSQNLY 320
            + R  + L      +  S L   C S N+TSF+++ V +L + LY
Sbjct: 1233 FQRYESTLTDDQCFINVSPLLLKCPSCNATSFSLRSVKSLKETLY 1277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,913
Number of Sequences: 5004
Number of extensions: 34230
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)