Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K24
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0332 + 42811828-42811956,42812043-42812093,42812995-42813144    109   2e-24
05_01_0056 + 406039-406167,406262-406312,406474-406479                 64   1e-10

>01_07_0332 + 42811828-42811956,42812043-42812093,42812995-42813144
          Length = 109

 Score =  109 bits (262), Expect = 2e-24
 Identities = 50/103 (48%), Positives = 73/103 (70%)
 Frame = +3

Query: 138 LYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGKLN 317
           LYR +TIG  L ++L +++  G ++P LA++VL+QFDKS+  AL + VKS++T K G L+
Sbjct: 6   LYRRSTIGMCLTDTLDDMVSSGALSPELAIQVLVQFDKSMTSALEHQVKSKVTVK-GHLH 64

Query: 318 TYRFCDNVWTFMLNDVEFREVQELAXVEKVKIVXCDGKNVDDR 446
           TYRFCDNVWTF+L D  F+  +    + KVKIV CD K ++ +
Sbjct: 65  TYRFCDNVWTFILTDAIFKNEEITETINKVKIVACDSKLLETK 107


>05_01_0056 + 406039-406167,406262-406312,406474-406479
          Length = 61

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 28/55 (50%), Positives = 42/55 (76%)
 Frame = +3

Query: 138 LYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFK 302
           LYR +TIG  L E+L E++  G ++P LA++VL+QFDKS+ +AL N VKS+++ K
Sbjct: 6   LYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,900,103
Number of Sequences: 37544
Number of extensions: 166313
Number of successful extensions: 308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)