Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K24
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19752| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)                     31   0.69 
SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)                28   6.4  

>SB_19752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 32/59 (54%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
 Frame = +3

Query: 258 NQALSNXVKSRLT-FKAGKLNTYRFCDNVWTFMLNDVEFREVQELAXVEKVKIVXCDGK 431
           N  L N ++  L     G LNTYRFCDNVWTF+L +V+FR+V ++  V+KVK+V CDGK
Sbjct: 133 NTTLGNSLQESLDELIQGHLNTYRFCDNVWTFVLENVDFRDVGDVVKVDKVKVVACDGK 191



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +3

Query: 138 LYRNTTIGNTLQESLXELIQ 197
           LYRNTT+GN+LQESL ELIQ
Sbjct: 130 LYRNTTLGNSLQESLDELIQ 149


>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
          Length = 1249

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -1

Query: 448 LRSSTFLPSHXTILTFSTLANSCTSRNSTSFNIKVHTLSQNLYVLSFPALKVSL 287
           L+++TF PS     + STL  S    +ST  N+ + TL  N   ++ PA   SL
Sbjct: 461 LKNTTFTPSEIVSPSISTLHTSTVELSSTG-NVSMLTLKTNSIPVTSPAPSTSL 513


>SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)
          Length = 607

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +3

Query: 204 QITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGKLNTYRFCDNVWTFMLNDV 365
           ++T  +  KV  +  K +   ++N V +++T+K  K  T    +NV   + N+V
Sbjct: 52  EVTNKITNKVTNKMTKKVTIKVTNKVTNKVTYKMTKKVTCNVANNVTNKVTNEV 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,801,929
Number of Sequences: 59808
Number of extensions: 225836
Number of successful extensions: 367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)