Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K24
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24440.2 68417.m03504 transcription initiation factor IIA gam...   111   4e-25
At4g24440.1 68417.m03503 transcription initiation factor IIA gam...   111   4e-25
At2g42120.2 68415.m05210 DNA polymerase delta small subunit-rela...    32   0.32 
At2g42120.1 68415.m05209 DNA polymerase delta small subunit-rela...    32   0.32 
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ...    28   5.2  
At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619 C...    27   6.9  
At2g07170.1 68415.m00821 expressed protein                             27   6.9  
At4g24020.1 68417.m03452 RWP-RK domain-containing protein simila...    27   9.1  

>At4g24440.2 68417.m03504 transcription initiation factor IIA gamma
           chain / TFIIA-gamma (TFIIA-S) identical to transcription
           initiation factor IIA gamma chain SP:Q39236 from
           [Arabidopsis thaliana];
          Length = 106

 Score =  111 bits (266), Expect = 4e-25
 Identities = 51/98 (52%), Positives = 71/98 (72%)
 Frame = +3

Query: 138 LYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGKLN 317
           LYR +TIG  L E+L E++Q G ++P LA++VL+QFDKS+ +AL + VK++++ K G L+
Sbjct: 6   LYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK-GHLH 64

Query: 318 TYRFCDNVWTFMLNDVEFREVQELAXVEKVKIVXCDGK 431
           TYRFCDNVWTF+L D  F+       V +VKIV CD K
Sbjct: 65  TYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSK 102


>At4g24440.1 68417.m03503 transcription initiation factor IIA gamma
           chain / TFIIA-gamma (TFIIA-S) identical to transcription
           initiation factor IIA gamma chain SP:Q39236 from
           [Arabidopsis thaliana];
          Length = 106

 Score =  111 bits (266), Expect = 4e-25
 Identities = 51/98 (52%), Positives = 71/98 (72%)
 Frame = +3

Query: 138 LYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGKLN 317
           LYR +TIG  L E+L E++Q G ++P LA++VL+QFDKS+ +AL + VK++++ K G L+
Sbjct: 6   LYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK-GHLH 64

Query: 318 TYRFCDNVWTFMLNDVEFREVQELAXVEKVKIVXCDGK 431
           TYRFCDNVWTF+L D  F+       V +VKIV CD K
Sbjct: 65  TYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSK 102


>At2g42120.2 68415.m05210 DNA polymerase delta small subunit-related
           similar to DNA polymerase delta small subunit SP:Q9LRE5
           from [Oryza sativa]
          Length = 440

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +3

Query: 162 NTLQESLXEL-IQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGK-LNTYRFCD 335
           +TL E + EL I   QI   ++V ++   +   N AL     +R  F      NT+R C 
Sbjct: 251 STLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNTFRSCT 310

Query: 336 NVWTFMLNDVEF 371
           N  +F ++++ F
Sbjct: 311 NPHSFDVDNIRF 322


>At2g42120.1 68415.m05209 DNA polymerase delta small subunit-related
           similar to DNA polymerase delta small subunit SP:Q9LRE5
           from [Oryza sativa]
          Length = 441

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +3

Query: 162 NTLQESLXEL-IQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGK-LNTYRFCD 335
           +TL E + EL I   QI   ++V ++   +   N AL     +R  F      NT+R C 
Sbjct: 252 STLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNTFRSCT 311

Query: 336 NVWTFMLNDVEF 371
           N  +F ++++ F
Sbjct: 312 NPHSFDVDNIRF 323


>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 687

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 64  CIKTYEILLFFI*LQCNLNSDVISTYTEIPLLVIHFK 174
           C KT   ++F+  L CNL+   +    ++P  + H K
Sbjct: 188 CCKTEVFMIFYHCLTCNLSMHPVCAMRKVPFFIDHPK 224


>At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619
           Cullin homolog 4A (CUL-4A) {Homo sapiens}; contains Pfam
           profile PF00888: Cullin family
          Length = 792

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 135 NLYRNTTIGNTLQESLXELIQYGQITPA 218
           + Y+N + GNT+++S   LI   Q  PA
Sbjct: 411 SFYKNESFGNTIKDSFEHLINLRQNRPA 438


>At2g07170.1 68415.m00821 expressed protein
          Length = 893

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 448 LRSSTFLPSHXTILTFSTLANSCTSRNSTSFNIKVHTLSQNLY 320
           + +S F+  H    T S   +SCTSR ST    +  TLS + Y
Sbjct: 573 ISNSNFV-KHNQGSTISPRLSSCTSRTSTDIRNRQSTLSTSKY 614


>At4g24020.1 68417.m03452 RWP-RK domain-containing protein similar to
            nodule inception protein [Lotus japonicus] GI:6448579;
            contains Pfam profile: PF02042 RWP-RK domain
          Length = 959

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 267  LSNXVKSRLTFKAGKLNT-YRFCDNVWTFMLNDVEFREVQELAXVEKVKIV 416
            L + V  RL   AG  +  Y   DN W  +  D + +E  E+    + KIV
Sbjct: 888  LKDEVAKRLKVDAGTFDIKYLDDDNEWVLIACDADLQECLEIPRSSRTKIV 938


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,674,799
Number of Sequences: 28952
Number of extensions: 157280
Number of successful extensions: 277
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)