Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K20
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...   130   1e-31
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          25   7.2  
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    25   7.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   9.5  

>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score =  130 bits (315), Expect = 1e-31
 Identities = 73/185 (39%), Positives = 95/185 (51%)
 Frame = +2

Query: 98  KNFNDLCFKFGLXLDEVTTEKQMLIKEQGDQADAELSDEILYRIDIPANXYXXXXXXXXX 277
           + F++LCF+FG+ LDE TT          +  +   S+    +IDIPAN Y         
Sbjct: 22  QEFDELCFQFGIELDEDTT----------NDPERSPSERPSLKIDIPANRYDMLCLEGIA 71

Query: 278 XXXXXFQGXXXXXXXXXXXXEDCNSLHLTMATAQIRPYAVAAVLXGITFTKESYDSFIDL 457
                F                  SL ++  T++IRPYA AA+L G+      Y SFI L
Sbjct: 72  QALNVFN--RRMATPQYKLLPSTTSLTISPETSEIRPYAAAAILRGVKLDPIRYQSFIAL 129

Query: 458 QDKLHQNICRKRTLVAIGTHDLDTIHGPFIYDALPPNEIKFKALNQPKELTAPELMELYS 637
           QDKLH N+CR RTLVAIGTHD   + GPF Y+AL P EI F  LNQ +E+    L+E Y 
Sbjct: 130 QDKLHANLCRNRTLVAIGTHDFSVMEGPFTYEALKPEEINFVPLNQTQEINGSNLLEFYK 189

Query: 638 NHAQL 652
           +   L
Sbjct: 190 DSKHL 194



 Score = 29.1 bits (62), Expect = 0.58
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 37  PQLSLKRDALFAALGSTYTDEEFQRPMFQ 123
           P +S  ++ L+ ALG  YT +EF    FQ
Sbjct: 2   PTISCDKEELYKALGREYTTQEFDELCFQ 30


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 427 CKSNAXKYSCYSIGSYLCC 371
           C+ NA KY C    S  CC
Sbjct: 12  CQKNASKYRCPRCDSRFCC 30


>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -3

Query: 338 HIFSLCTEVEVSSPGTXIDHQQVLRGTISHXYWLGCL 228
           HI  LC E + ++         V  GT +H +   C+
Sbjct: 47  HIMDLCIECQANTDSAAAQECTVAWGTCNHAFHFHCI 83


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 102  ISTTYVSNLVXSLMKLLRRNK 164
            +ST   SN+V  L+KLL +NK
Sbjct: 1318 LSTLSSSNIVSHLLKLLEKNK 1338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,741
Number of Sequences: 5004
Number of extensions: 48427
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)