Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K20
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3744| Best HMM Match : No HMM Matches (HMM E-Value=.)              143   1e-34
SB_47414| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_48915| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.0031)        29   4.3  
SB_11544| Best HMM Match : zf-CCCH (HMM E-Value=9.6)                   28   5.7  
SB_39307| Best HMM Match : ShTK (HMM E-Value=0.055)                    28   7.6  
SB_11488| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_3744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score =  143 bits (347), Expect = 1e-34
 Identities = 66/94 (70%), Positives = 74/94 (78%)
 Frame = +2

Query: 353 LHLTMATAQIRPYAVAAVLXGITFTKESYDSFIDLQDKLHQNICRKRTLVAIGTHDLDTI 532
           L L   T  +RP+ VAA+L  ITFTK SYDSFI+LQDKLH N+CR+RTLVAIGTHD D I
Sbjct: 33  LELDEVTTAVRPHCVAAILRNITFTKNSYDSFIELQDKLHHNLCRRRTLVAIGTHDYDNI 92

Query: 533 HGPFIYDALPPNEIKFKALNQPKELTAPELMELY 634
            GPF+YDA PP EIKFK L+Q KE TA ELMELY
Sbjct: 93  KGPFLYDARPPTEIKFKPLSQTKEFTAVELMELY 126



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 37  PQLSLKRDALFAALGSTYTDEEFQRPMF 120
           P + ++++ LF ALG  YTD+EFQ   F
Sbjct: 2   PTVDVEKERLFHALGQRYTDDEFQELCF 29



 Score = 32.3 bits (70), Expect = 0.35
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +2

Query: 104 FNDLCFKFGLXLDEVTT 154
           F +LCF FGL LDEVTT
Sbjct: 24  FQELCFDFGLELDEVTT 40


>SB_47414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
 Frame = +2

Query: 377 QIRPYAVAAVLXGITFTKES-YDSFIDLQDKLHQNICRKRTLVAIGTHDLDTIHGPFIYD 553
           Q+RPY V  ++  +  +  + +  FI +Q  LH+++C  R L  I TH L+T+  P  YD
Sbjct: 291 QVRPYIVCTLVKDLDLSVPAMFKKFIAVQ--LHESLCDSRVLATIATHSLETLSLPLTYD 348

Query: 554 ALPPNEIKFKALNQPKELTAPELME 628
           A    E++   L + K + A EL++
Sbjct: 349 AGKSEEVEILPLGRQKPVKAKELVD 373


>SB_48915| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.0031)
          Length = 511

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 401 AVLXGITFTKESYDSFIDLQDKLHQNICRKRTLVAIGTHDLD 526
           ++L  I  T E+    I  + K+H+NIC    +  I  HDLD
Sbjct: 400 SLLNDIQLTVETAPDII-AETKIHENICLNLHIPGIRRHDLD 440


>SB_11544| Best HMM Match : zf-CCCH (HMM E-Value=9.6)
          Length = 233

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 213 SSDNSASAWSPCSLINICFSVVTSSSXKPNLKHRSLKFFIS 91
           S + SA A+   ++ N C + VT+ + K    HR LKF ++
Sbjct: 98  SYERSACAYVQQAIQNTCIARVTNCTAKCAFAHRPLKFTLN 138


>SB_39307| Best HMM Match : ShTK (HMM E-Value=0.055)
          Length = 79

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 126 NLKHRSLKFFISVCRTECGE 67
           N  HRS  F + VCR  CG+
Sbjct: 58  NRNHRSYAFIMDVCRKTCGQ 77


>SB_11488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +2

Query: 137 LDEVTTEKQMLIKEQGDQADAELS--DEILYRI 229
           +++ TT+ + L+KE+  Q + E S  DE+LYR+
Sbjct: 13  MEKYTTDLESLVKERTRQLETEKSKTDELLYRM 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,599,270
Number of Sequences: 59808
Number of extensions: 351442
Number of successful extensions: 966
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)