Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K20
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 428 KESYDSFIDLQDKLHQ 475
           +E+ D+F DLQDK ++
Sbjct: 392 QETADAFKDLQDKYYE 407


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 601 FWLIKSFELNLIWRQC 554
           F+L+ S  ++L WR C
Sbjct: 124 FYLLVSLRIDLPWRTC 139


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 601 FWLIKSFELNLIWRQC 554
           F+L+ S  ++L WR C
Sbjct: 177 FYLLVSLRIDLPWRTC 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,923
Number of Sequences: 438
Number of extensions: 3561
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)