Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K20
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72550.2 68414.m08390 tRNA synthetase beta subunit family pro...   167   6e-42
At1g72550.1 68414.m08389 tRNA synthetase beta subunit family pro...   167   6e-42
At2g28050.1 68415.m03401 pentatricopeptide (PPR) repeat-containi...    28   4.7  
At1g72300.1 68414.m08358 leucine-rich repeat transmembrane prote...    28   6.2  

>At1g72550.2 68414.m08390 tRNA synthetase beta subunit family
           protein contains Pfam profiles: PF03484
           phenylalanine-tRNA synthetase, B5 domain, PF03483 B3/4
           domain; an isoform contains a non-consensus TG acceptor
           splice site at a terminal exon.
          Length = 584

 Score =  167 bits (406), Expect = 6e-42
 Identities = 83/187 (44%), Positives = 115/187 (61%), Gaps = 2/187 (1%)
 Frame = +2

Query: 98  KNFNDLCFKFGLXLDEVTTEKQMLIKEQGDQADAELSDEILYRIDIPANXYXXXXXXXXX 277
           + F +LCF FG+ LD+VTTEK ++ KE+    +A+  +EI+Y+I+IPAN           
Sbjct: 22  EKFEELCFSFGIELDDVTTEKAIIRKEKHIDEEADDDEEIIYKIEIPANRPDLLCLEGLA 81

Query: 278 XXXXXF--QGXXXXXXXXXXXXEDCNSLHLTMATAQIRPYAVAAVLXGITFTKESYDSFI 451
                F  +             +    +++   T++IRP+ V AVL G+TF +  Y+SFI
Sbjct: 82  QSLRVFIEKQEIPTYTLADISKDKILQMNVKPETSKIRPFVVCAVLRGVTFDEARYNSFI 141

Query: 452 DLQDKLHQNICRKRTLVAIGTHDLDTIHGPFIYDALPPNEIKFKALNQPKELTAPELMEL 631
           DLQDKLHQNICR+R+LVAIGTHDLDT+ GPF Y+ALPP +I F  L Q K   A EL+E 
Sbjct: 142 DLQDKLHQNICRRRSLVAIGTHDLDTLQGPFTYEALPPTDINFVPLKQTKSFRADELIEF 201

Query: 632 YSNHAQL 652
           Y +  +L
Sbjct: 202 YKSDMKL 208



 Score = 35.5 bits (78), Expect = 0.031
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +1

Query: 37  PQLSLKRDALFAALGSTYTDEEFQRPMF 120
           P +S+ RD LFAALG +YT E+F+   F
Sbjct: 2   PTISVGRDRLFAALGESYTQEKFEELCF 29


>At1g72550.1 68414.m08389 tRNA synthetase beta subunit family
           protein contains Pfam profiles: PF03484
           phenylalanine-tRNA synthetase, B5 domain, PF03483 B3/4
           domain; an isoform contains a non-consensus TG acceptor
           splice site at a terminal exon.
          Length = 598

 Score =  167 bits (406), Expect = 6e-42
 Identities = 83/187 (44%), Positives = 115/187 (61%), Gaps = 2/187 (1%)
 Frame = +2

Query: 98  KNFNDLCFKFGLXLDEVTTEKQMLIKEQGDQADAELSDEILYRIDIPANXYXXXXXXXXX 277
           + F +LCF FG+ LD+VTTEK ++ KE+    +A+  +EI+Y+I+IPAN           
Sbjct: 22  EKFEELCFSFGIELDDVTTEKAIIRKEKHIDEEADDDEEIIYKIEIPANRPDLLCLEGLA 81

Query: 278 XXXXXF--QGXXXXXXXXXXXXEDCNSLHLTMATAQIRPYAVAAVLXGITFTKESYDSFI 451
                F  +             +    +++   T++IRP+ V AVL G+TF +  Y+SFI
Sbjct: 82  QSLRVFIEKQEIPTYTLADISKDKILQMNVKPETSKIRPFVVCAVLRGVTFDEARYNSFI 141

Query: 452 DLQDKLHQNICRKRTLVAIGTHDLDTIHGPFIYDALPPNEIKFKALNQPKELTAPELMEL 631
           DLQDKLHQNICR+R+LVAIGTHDLDT+ GPF Y+ALPP +I F  L Q K   A EL+E 
Sbjct: 142 DLQDKLHQNICRRRSLVAIGTHDLDTLQGPFTYEALPPTDINFVPLKQTKSFRADELIEF 201

Query: 632 YSNHAQL 652
           Y +  +L
Sbjct: 202 YKSDMKL 208



 Score = 35.5 bits (78), Expect = 0.031
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +1

Query: 37  PQLSLKRDALFAALGSTYTDEEFQRPMF 120
           P +S+ RD LFAALG +YT E+F+   F
Sbjct: 2   PTISVGRDRLFAALGESYTQEKFEELCF 29


>At2g28050.1 68415.m03401 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 462

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = -2

Query: 354 KELQSSYFFTLYXXXXXFPWNXNRPSTSPSRHNKSYXLAGMSIL*RISSDNSASAWSPCS 175
           K  + +Y F++Y        + N+   SP        L   S L RI SD    +W   S
Sbjct: 11  KTAKQTYTFSIYKLLLNSS-SINQTLASPETPLSDLNL---STLRRILSDPDIKSWKCIS 66

Query: 174 LINICFSVVTSSSXKPNLK-HRSLKF 100
           L N      +  S +P+L+ H SL F
Sbjct: 67  LFNFILENPSLFSFQPDLRTHLSLTF 92


>At1g72300.1 68414.m08358 leucine-rich repeat transmembrane protein
           kinase, putative similar to GI:3641252 from [Malus x
           domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999))
          Length = 1095

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 557 LPPNEIKFKALNQPKELTAPELMELYSNHAQ 649
           LP N +  K  N    LT   L+ELYSNH +
Sbjct: 278 LPVNRLSGKIDNGITRLTKLTLLELYSNHIE 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,034,093
Number of Sequences: 28952
Number of extensions: 246481
Number of successful extensions: 488
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)