Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K17
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    26   4.1  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   4.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   7.2  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   9.5  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   9.5  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 80  AAVSAAPQYYHGSSHWPYHHYDPLQSL 160
           A  +A PQYY     +P  HY P Q L
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQPL 528


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 168 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPXIINEGRV 287
           E   + + +W+++  +MQ  D   ++L   F  I N G++
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKL 143


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 213  EMQHLDNMMKELSLKFPXIINEGRV 287
            E+++L NM+ EL  KFP +   GR+
Sbjct: 1509 EVEYLVNMVDELLNKFPDVNFTGRI 1533


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 637 VLWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGXATGLLL 512
           V WA+   T      L++++S+    T    +SV  A GLLL
Sbjct: 88  VWWAIRTITHLEIVGLNILSSLKYGSTLFSWISVANAFGLLL 129


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 30/117 (25%), Positives = 42/117 (35%)
 Frame = +3

Query: 249 SLKFPXIINEGRVEGDKYXISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPW 428
           +L+ P I ++G V       ++ L        +V+   G  M  A SA   +    NLP 
Sbjct: 157 NLRSPAIDSDGTVLAPIQTSNVDLGSQYYSSPHVRPAVGATM--AGSAMRTFPS--NLPL 212

Query: 429 DVNSEGSWVYEKDVLKITFPLKQKQPEDSKRPVAXPTXTTSTNVSREEMEFTTXSNV 599
                 S      V  I  PL          P       TS   +REE ++T  SNV
Sbjct: 213 GHPPPPSDSANSSVTPIAAPLVVNGKVSGNPPYPAEIIPTSNVPNREEKDWTVTSNV 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,269
Number of Sequences: 5004
Number of extensions: 47952
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)