Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_K15
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 225 4e-60
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 160 2e-40
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 43 3e-05
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 41 2e-04
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 37 0.003
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 29 0.59
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 28 1.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 28 1.4
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 27 2.4
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 27 3.1
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom... 26 4.1
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 5.5
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.5
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 7.2
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 7.2
SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 7.2
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 25 7.2
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 225 bits (550), Expect = 4e-60
Identities = 108/218 (49%), Positives = 146/218 (66%)
Frame = +1
Query: 1 WGVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXK 180
WGVN PAHLV++KGTEYYD K Y DM +TDVLQM+GRAGRPQFDN GVA + V D K
Sbjct: 1458 WGVNTPAHLVIVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIKK 1517
Query: 181 NFYXKFLYEPFPVESSLLEVLADHLNAEIVAGTVQTKQDILHYLTWTYFFRRLLKNPSYY 360
+FY FL+ FPVES L +VL +HLNAEI GT+ Q + +LT TYF+RR+ +NP YY
Sbjct: 1518 SFYKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFLTCTYFYRRVHQNPVYY 1577
Query: 361 NLESLEPQDVNHFLSGLVQTSLDALCAAFCVEIEQDERTVHSTWMGRIXSYYYLSHRTMA 540
+ + + ++ +LS LV T+ + L + C+ +E T T +GRI SYYYL H T+
Sbjct: 1578 GADGDDQKSIDTYLSKLVVTAFNELEKSACI-YRVNEETYAPTTLGRIVSYYYLFHTTIR 1636
Query: 541 HFSXNLNGNMNVDDLLRVLSDSEEYATLPVRHNEDLLN 654
+F + N D L++L+++ E+ L +RHNEDL+N
Sbjct: 1637 NFVQKITENAEFDLALQLLAEASEFDDLAIRHNEDLIN 1674
Score = 134 bits (324), Expect = 1e-32
Identities = 70/217 (32%), Positives = 119/217 (54%), Gaps = 3/217 (1%)
Frame = +1
Query: 1 WGVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXK 180
WGVN PA+ V+IKGT+ YD ++ +VD+ + DVLQ+ GRAGRPQF++ VA ++
Sbjct: 623 WGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKL 682
Query: 181 NFYXKFLYEPFPVESSLLEVLADHLNAEIVAGTVQTKQDILHYLTWTYFFRRLLKNPSYY 360
+ Y + + P+ES + L D+LNAE+ GTV + + +L +TY + R+ +NP Y
Sbjct: 683 SHYISVVTQQSPIESRFTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVY 742
Query: 361 NL---ESLEPQDVNHFLSGLVQTSLDALCAAFCVEIEQDERTVHSTWMGRIXSYYYLSHR 531
+ E +E + LV + L + + + +GRI S YY++++
Sbjct: 743 GIAYDELVEDPLLGSKRRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQ 802
Query: 532 TMAHFSXNLNGNMNVDDLLRVLSDSEEYATLPVRHNE 642
T++ + L M+ D++ +LS E++ + R NE
Sbjct: 803 TVSTLNNLLKSKMSEADIIALLSQCSEFSQIKSRENE 839
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 160 bits (388), Expect = 2e-40
Identities = 73/211 (34%), Positives = 130/211 (61%)
Frame = +1
Query: 19 AHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXKNFYXKF 198
++ V++ GT+YYDGK+ RY+D PI+++LQM+G +++ K +Y KF
Sbjct: 1693 SNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKF 1752
Query: 199 LYEPFPVESSLLEVLADHLNAEIVAGTVQTKQDILHYLTWTYFFRRLLKNPSYYNLESLE 378
L EP P+ES L L D +EI T+++KQD + +LTW+Y +RRL+ NP+YY L+ +
Sbjct: 1753 LNEPLPMESHLQVWLHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVANPAYYGLQDIT 1812
Query: 379 PQDVNHFLSGLVQTSLDALCAAFCVEIEQDERTVHSTWMGRIXSYYYLSHRTMAHFSXNL 558
+ V+ FLS LV+T+++ L A + ++ ++ + + + I S+Y +++ TM F+ +L
Sbjct: 1813 HESVSEFLSDLVETTMNDLSEARLITVDDEDDSCVALNLAMIASHYGITYITMQTFALSL 1872
Query: 559 NGNMNVDDLLRVLSDSEEYATLPVRHNEDLL 651
+ + LL +++ + EY LP+R ED++
Sbjct: 1873 SERTKMKGLLEIVTSAAEYEQLPIRKYEDIV 1903
Score = 144 bits (348), Expect = 1e-35
Identities = 73/217 (33%), Positives = 127/217 (58%), Gaps = 3/217 (1%)
Frame = +1
Query: 1 WGVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXK 180
WGVN PAH V+IKGT+ Y ++ + ++ DVLQM+GRAGRPQFD G +++
Sbjct: 856 WGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSEL 915
Query: 181 NFYXKFLYEPFPVESSLLEVLADHLNAEIVAGTVQTKQDILHYLTWTYFFRRLLKNPSYY 360
+Y + + P+ES + LAD LNAE+ GTV++ +D + +L +TY + R+L++P+ Y
Sbjct: 916 QYYLSLMNQQLPIESQFMRRLADCLNAEVSLGTVRSIEDGVDWLGYTYLYVRMLRSPALY 975
Query: 361 NLESLEPQDVNHFL---SGLVQTSLDALCAAFCVEIEQDERTVHSTWMGRIXSYYYLSHR 531
++ E D + + + L+ ++ L + + T+ +T +G++ + YY++H
Sbjct: 976 SV-GPEYDDDKYLVQKRADLLHSAAILLEKCKLLVYNRQSGTLTATELGKVAASYYVTHN 1034
Query: 532 TMAHFSXNLNGNMNVDDLLRVLSDSEEYATLPVRHNE 642
+MA ++ L + +L RV S S+E+ +PVR E
Sbjct: 1035 SMAIYNRLLMQTTSFIELFRVFSFSDEFKHIPVREEE 1071
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 43.2 bits (97), Expect = 3e-05
Identities = 27/86 (31%), Positives = 46/86 (53%)
Frame = +1
Query: 4 GVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXKN 183
G+N PA VV +DGK R++ + +QM GRAGR D+ G+ ++++ ++
Sbjct: 556 GLNMPAKTVVFTNVRKFDGKTFRWISGG--EYIQMSGRAGRRGLDDRGIVILMIDEK--- 610
Query: 184 FYXKFLYEPFPVESSLLEVLADHLNA 261
+P PV S+L+ AD L++
Sbjct: 611 ------MDP-PVAKSMLKGEADRLDS 629
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +1
Query: 4 GVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVL 162
GVN PA VV GT+ +DG+ R D+ + Q GRAGR D G ++L
Sbjct: 652 GVNMPAKSVVFSGTQKHDGRNFR--DLLPGEYTQCSGRAGRRGLDVTGTVIIL 702
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 4 GVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLV 165
G+N PA V+ + + G R++ + +QM GRAGR D +G+++V++
Sbjct: 472 GLNMPARTVLFTKAQKFSGNNFRWLTSG--EYMQMSGRAGRRGIDTKGLSIVIL 523
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 29.1 bits (62), Expect = 0.59
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 334 RLLKNPSYYNLESLEPQDVNHFLSGLVQTSLDALCAAFCVEIEQD 468
R+L PSY+ + + P VNH L + +L+++ C + D
Sbjct: 240 RVLGTPSYHEISVMNPNYVNHSLPNVRPHTLESVMPHNCTKNAMD 284
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 187 YXKFLYEPFPVESSLLEVLADHLNAEIVA 273
Y LY FP+++ LEV++D N E A
Sbjct: 550 YLMDLYSLFPLDAQFLEVISDEKNEEFPA 578
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +1
Query: 364 LESLEPQDVNHFLSGLVQTSLDALCAAFCVEIEQDER 474
+++L P +HF + L+ SL +LC + C +++ +++
Sbjct: 100 VDNLNPNS-SHFSASLLPASLSSLCDSTCGDVDDEQQ 135
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 27.1 bits (57), Expect = 2.4
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +1
Query: 322 YFFRRLLKNPSYYNLESLEPQDVNHFLSGLVQTSLDALCAAFCVEIEQDERTVHSTWMGR 501
+FFRR LK SY+NL + ++H L L AL A + Q+ + S G
Sbjct: 239 FFFRRSLKKVSYFNLATFITL-LHHCLLVLTPFQKWALSAPRTNILAQNREGIASL-PGY 296
Query: 502 IXSYYY 519
I Y+Y
Sbjct: 297 IAIYFY 302
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 4 GVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGR 126
G+N +V + + G +D+P+ + Q+ GRAGR
Sbjct: 401 GLNLGVKRIVFSDLKKFSGVST--IDIPVPQIKQIAGRAGR 439
>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 195 VPIRTVPGRIESARSVGGSSER*DRRRHGANK--TRHPTLFDVDLFLPEVTKKSLVL 359
V + T+ +ESA+S + D +HG K T+ P + LP +K V+
Sbjct: 8 VDLATISKLLESAKSTLQEKQASDDDKHGQQKLLTKIPKIISSSFELPSYFEKKFVM 64
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 325 FFRRLLKNPSYYNLESLEPQDVNHFLSGLVQTSLDALCAAFCV 453
F+R +LKNP Y + + E + V +S LV CV
Sbjct: 408 FYRLVLKNPDYARIATFEDKFVG-AISSLVAEDNSLYVTVLCV 449
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 613 ILQNXTIPVADHPRSYYRLDXLRNEPLSCATDSNT 509
+L++ TIP HP+S + EPL + SN+
Sbjct: 175 VLRDSTIPANSHPQSLPSNSIPKTEPLDTPSLSNS 209
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +1
Query: 160 LVHDQXKNFYXKFLYEPFPVESSLLEVLADHLN----AEIVAGTVQTKQDI 300
LV D+ FY K + + + + ++ADH+ A+I A K+++
Sbjct: 123 LVEDEVDRFYNKLGLDDYYFQMEPVSIIADHIEIIYAAKIAAHASHAKEEL 173
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 589 VADHPRSYYRL-DXLRNEPLSCATDSNTT 506
+ADHP +Y+L D ++ + A +SN T
Sbjct: 359 LADHPERFYKLKDWSKSPDFNLALESNRT 387
>SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 198
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 313 TWTYFFRRLLKNPSY-YNLESLEPQDV 390
T TY+F R KNP Y + LE + ++V
Sbjct: 42 TKTYYFARDAKNPDYIFGLELYDSKEV 68
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 304 HYLTWTYFFRRLLKNPSYYNLE 369
HY W Y F+ L PSY + E
Sbjct: 75 HYTVWAYRFQILNHTPSYIDNE 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,404
Number of Sequences: 5004
Number of extensions: 49653
Number of successful extensions: 161
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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