Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_K15
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10588| Best HMM Match : Sec63 (HMM E-Value=0) 294 4e-80
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0) 206 1e-53
SB_51263| Best HMM Match : ADC (HMM E-Value=3) 75 7e-14
SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10) 44 8e-05
SB_14596| Best HMM Match : Helicase_C (HMM E-Value=0.027) 30 1.4
SB_4326| Best HMM Match : V-set (HMM E-Value=0.036) 29 2.5
SB_52511| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 29 3.3
SB_20790| Best HMM Match : MutS_III (HMM E-Value=8.8) 29 4.4
SB_2939| Best HMM Match : Ku (HMM E-Value=2.8e-07) 28 7.6
>SB_10588| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 1047
Score = 294 bits (722), Expect = 4e-80
Identities = 133/218 (61%), Positives = 169/218 (77%)
Frame = +1
Query: 1 WGVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXK 180
WGVNFPAHLVVIKGTEY+DGK+ RYVD PITDVLQMMGRAGRPQ+D++G AV+LVHD K
Sbjct: 517 WGVNFPAHLVVIKGTEYFDGKKCRYVDFPITDVLQMMGRAGRPQYDDQGKAVILVHDVKK 576
Query: 181 NFYXKFLYEPFPVESSLLEVLADHLNAEIVAGTVQTKQDILHYLTWTYFFRRLLKNPSYY 360
+FY KFLYEPFPVESSLLEVLADHLNAE+VAGT+ +KQD + Y+TWTYFFRRL+ NP+YY
Sbjct: 577 HFYKKFLYEPFPVESSLLEVLADHLNAEVVAGTITSKQDAMDYMTWTYFFRRLVMNPTYY 636
Query: 361 NLESLEPQDVNHFLSGLVQTSLDALCAAFCVEIEQDERTVHSTWMGRIXSYYYLSHRTMA 540
+L+ + VN +LS LV+++ L + C+ +D ++ T I SYYYL+H T+
Sbjct: 637 DLQDTDHDSVNKYLSRLVESAAAELELSGCLNTGEDSVSLSPTTAAHIASYYYLNHLTLR 696
Query: 541 HFSXNLNGNMNVDDLLRVLSDSEEYATLPVRHNEDLLN 654
L+ + ++ DLL VLS++ EY+ LPVRHNED +N
Sbjct: 697 MLKERLHADCSLPDLLEVLSEAHEYSELPVRHNEDAIN 734
>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 2590
Score = 206 bits (503), Expect = 1e-53
Identities = 94/213 (44%), Positives = 138/213 (64%)
Frame = +1
Query: 7 VNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXKNF 186
VN AHLVV+ T++Y+GK Y D P+TDVL M+G A RP D+ G AV+L K F
Sbjct: 2267 VNLSAHLVVVMDTQFYEGKTHSYADYPVTDVLHMIGHASRPLLDDAGKAVILCQASKKEF 2326
Query: 187 YXKFLYEPFPVESSLLEVLADHLNAEIVAGTVQTKQDILHYLTWTYFFRRLLKNPSYYNL 366
+ KFLYEP P+ES L L DH NAE+V T++ KQD + YLTWT+ +RR+ NP+YYNL
Sbjct: 2327 FKKFLYEPLPIESHLDHTLHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRMTLNPNYYNL 2386
Query: 367 ESLEPQDVNHFLSGLVQTSLDALCAAFCVEIEQDERTVHSTWMGRIXSYYYLSHRTMAHF 546
+ + + ++ +S LV+ +L+ L + CV +E DE V +G I +YYY+++ T+ F
Sbjct: 2387 QGVTHRHLSDHMSELVENTLNDLEQSKCVSVE-DEMDVTPLNLGMIAAYYYINYTTIELF 2445
Query: 547 SXNLNGNMNVDDLLRVLSDSEEYATLPVRHNED 645
S +LN + L+ ++S + EYA L +RH+E+
Sbjct: 2446 SVSLNAKTKLRGLVEIISSASEYAPLSIRHHEE 2478
Score = 165 bits (402), Expect = 2e-41
Identities = 80/219 (36%), Positives = 131/219 (59%), Gaps = 3/219 (1%)
Frame = +1
Query: 1 WGVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXK 180
WGVN PAH V+IKGT+ Y ++ R+V++ D+LQM+GRAGRPQ+D +G +++
Sbjct: 1449 WGVNLPAHTVIIKGTQVYSPEKGRWVELGALDILQMLGRAGRPQYDTKGEGILITSHGEL 1508
Query: 181 NFYXKFLYEPFPVESSLLEVLADHLNAEIVAGTVQTKQDILHYLTWTYFFRRLLKNPSYY 360
+Y + + PVES + LAD+LNAE+V G+VQT +D +H+L +TY + R+L+NP+ Y
Sbjct: 1509 QYYLSLMNQQLPVESQFISKLADNLNAEVVLGSVQTAKDAVHWLGYTYLYIRMLRNPALY 1568
Query: 361 NLESLEPQD---VNHFLSGLVQTSLDALCAAFCVEIEQDERTVHSTWMGRIXSYYYLSHR 531
+ E + + + L+ ++ L ++ ++ T +GRI S+YYL+H
Sbjct: 1569 GISHDEIEKDPLLEQRRADLIHSAASLLDKNNLLKYDKKSGNFQVTELGRIASHYYLTHE 1628
Query: 532 TMAHFSXNLNGNMNVDDLLRVLSDSEEYATLPVRHNEDL 648
T++ F+ L ++ +L RV S S E+ + VR E L
Sbjct: 1629 TVSTFNNLLKPTLSEIELFRVFSLSSEFKYINVREEEKL 1667
>SB_51263| Best HMM Match : ADC (HMM E-Value=3)
Length = 220
Score = 74.5 bits (175), Expect = 7e-14
Identities = 37/83 (44%), Positives = 48/83 (57%)
Frame = +1
Query: 16 PAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXKNFYXK 195
P+ +V GTE YD K+ +VD+ I DVLQ+ GRAGRPQFD G ++ + Y
Sbjct: 49 PSFVVCRIGTEVYDAKKGSFVDLGILDVLQIFGRAGRPQFDKFGEGTIITAHDRLSHYLS 108
Query: 196 FLYEPFPVESSLLEVLADHLNAE 264
L P+ES+L L D LNAE
Sbjct: 109 LLTRQAPIESTLTASLTDSLNAE 131
>SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)
Length = 228
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +1
Query: 4 GVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQ 174
G+N PA VV +DGK R++ + +QM GRAGR D G+ ++++ ++
Sbjct: 75 GLNMPARTVVFSNARKFDGKDFRFITSG--EYIQMSGRAGRRGLDERGIVILIIDEK 129
>SB_14596| Best HMM Match : Helicase_C (HMM E-Value=0.027)
Length = 111
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 1 WGVNFPAHLVVIKGTE 48
WGVN PAH V+IK T+
Sbjct: 51 WGVNLPAHAVIIKFTD 66
>SB_4326| Best HMM Match : V-set (HMM E-Value=0.036)
Length = 156
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 330 PEVTKKSLVLQFGELGAARREPFPVGSRPN 419
P +TKK+ L E GA FP G RP+
Sbjct: 95 PAITKKTWQLSVRETGAVNTTYFPAGERPS 124
>SB_52511| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 513
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 127 PQFDNEGVAVV---LVHDQXKNFYXKFLYEPFPVESSLLEVLADHLN 258
P+FD +G ++ L + K Y Y P V+ LE+L D+L+
Sbjct: 139 PRFDVKGCEIITASLQFSRTKKLYITSFYNPTSVDPKPLELLEDYLS 185
>SB_20790| Best HMM Match : MutS_III (HMM E-Value=8.8)
Length = 277
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 397 NGSRLAAPSSPNCNTRDFLVTSGRNRSTSNNV 302
N SR+ APS N TR+ +T N S N+V
Sbjct: 181 NNSRVDAPSQENAQTREEQITEDFNDSPINSV 212
>SB_2939| Best HMM Match : Ku (HMM E-Value=2.8e-07)
Length = 512
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 85 PITDVLQMMGRAGRPQFDNEGVAVVLV 165
P++D L ++GR G +F+ VAVV+V
Sbjct: 430 PVSDFLTIIGRVGANRFNEVVVAVVVV 456
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,848,153
Number of Sequences: 59808
Number of extensions: 392180
Number of successful extensions: 1252
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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