Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_K15
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar... 271 2e-73
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 217 4e-57
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 194 6e-50
At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative si... 85 5e-17
At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA he... 45 5e-05
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila... 43 2e-04
At1g59760.1 68414.m06729 ATP-dependent RNA helicase, putative si... 42 5e-04
At4g14790.1 68417.m02274 ATP-dependent RNA helicase, mitochondri... 34 0.095
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 31 0.51
At2g05360.1 68415.m00564 hypothetical protein 31 0.88
At3g32130.1 68416.m04091 hypothetical protein 30 1.5
At3g28910.1 68416.m03608 myb family transcription factor (MYB30)... 29 2.0
At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,... 29 2.7
At3g63010.1 68416.m07078 expressed protein similar to PrMC3 [Pin... 29 3.6
At4g32060.1 68417.m04563 calcium-binding EF hand family protein ... 28 4.7
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta... 28 4.7
At1g74650.1 68414.m08645 myb family transcription factor (cY13) ... 28 4.7
At1g08810.1 68414.m00981 myb family transcription factor (MYB60) 28 4.7
At5g15310.1 68418.m01793 myb family transcription factor contain... 27 8.2
At1g66230.1 68414.m07517 myb family transcription factor (MYB20)... 27 8.2
>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2146
Score = 271 bits (665), Expect = 2e-73
Identities = 122/218 (55%), Positives = 161/218 (73%)
Frame = +1
Query: 1 WGVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXK 180
WGVN PAHLV+IKGTEY+DGK KRYVD P+T++LQMMGRAGRPQFD G AV+LVH+ K
Sbjct: 1669 WGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTEILQMMGRAGRPQFDQHGKAVILVHEPKK 1728
Query: 181 NFYXKFLYEPFPVESSLLEVLADHLNAEIVAGTVQTKQDILHYLTWTYFFRRLLKNPSYY 360
+FY KFLYEPFPVESSL E L DH NAEIV+GT+ K+D +HYLTWTY FRRL+ NP+YY
Sbjct: 1729 SFYKKFLYEPFPVESSLKEKLHDHFNAEIVSGTIGNKEDAVHYLTWTYLFRRLMANPAYY 1788
Query: 361 NLESLEPQDVNHFLSGLVQTSLDALCAAFCVEIEQDERTVHSTWMGRIXSYYYLSHRTMA 540
LE + + + +LS LVQT+ + L + C+++ +D +V T +G I S YYL + T++
Sbjct: 1789 GLEGTQDETICSYLSRLVQTTFEDLEDSGCLKVNED--SVEPTMLGTIASQYYLCYMTVS 1846
Query: 541 HFSXNLNGNMNVDDLLRVLSDSEEYATLPVRHNEDLLN 654
F N+ + +++ L +L+ + EY LPVRHNE+ N
Sbjct: 1847 MFGSNIGPDTSLEAFLHILAGASEYDELPVRHNEENYN 1884
Score = 142 bits (345), Expect = 1e-34
Identities = 70/217 (32%), Positives = 119/217 (54%), Gaps = 3/217 (1%)
Frame = +1
Query: 1 WGVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXK 180
WGVN PAH VVIKGT+ YD K + D+ + DV+Q+ GRAGRPQFD G +++
Sbjct: 844 WGVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKL 903
Query: 181 NFYXKFLYEPFPVESSLLEVLADHLNAEIVAGTVQTKQDILHYLTWTYFFRRLLKNPSYY 360
+Y + L P+ES + L D+LNAE+V GTV ++ +L +TY R+ NP Y
Sbjct: 904 AYYLRLLTSQLPIESQFISSLKDNLNAEVVLGTVTNVKEACAWLGYTYLSIRMKLNPLAY 963
Query: 361 NL---ESLEPQDVNHFLSGLVQTSLDALCAAFCVEIEQDERTVHSTWMGRIXSYYYLSHR 531
+ E + ++ LV + +L A + ++ + T +GR+ S++Y+ +
Sbjct: 964 GIGWEEIIADPSLSLKQRALVADAARSLDKAKMMRFDEKSGNFYCTELGRVASHFYIQYS 1023
Query: 532 TMAHFSXNLNGNMNVDDLLRVLSDSEEYATLPVRHNE 642
++ ++ L +MN +++ +++ S E+ + VR E
Sbjct: 1024 SVETYNEMLKRHMNESEIINMVAHSSEFENIVVREEE 1060
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 217 bits (531), Expect = 4e-57
Identities = 99/215 (46%), Positives = 140/215 (65%)
Frame = +1
Query: 1 WGVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXK 180
WG AHLVV+ GT+YYDG++ + D P+ D+LQMMGRA RP DN G V+ H K
Sbjct: 1679 WGTPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHAPRK 1738
Query: 181 NFYXKFLYEPFPVESSLLEVLADHLNAEIVAGTVQTKQDILHYLTWTYFFRRLLKNPSYY 360
+Y KFLYE FPVES L L D+ NAE+VAG ++ KQD + YLTWT+ +RRL +NP+YY
Sbjct: 1739 EYYKKFLYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYY 1798
Query: 361 NLESLEPQDVNHFLSGLVQTSLDALCAAFCVEIEQDERTVHSTWMGRIXSYYYLSHRTMA 540
NL+ + + ++ LS LV+ +L L A+ C+E+E DE + +G I SYYY+S+ T+
Sbjct: 1799 NLQGVSHRHLSDHLSELVENTLSDLEASKCIEVE-DEMELSPLNLGMIASYYYISYTTIE 1857
Query: 541 HFSXNLNGNMNVDDLLRVLSDSEEYATLPVRHNED 645
FS L+ + LL +L+ + EY +P+R E+
Sbjct: 1858 RFSSLLSSKTKMKGLLEILTSASEYDMIPIRPGEE 1892
Score = 160 bits (389), Expect = 6e-40
Identities = 80/219 (36%), Positives = 130/219 (59%), Gaps = 3/219 (1%)
Frame = +1
Query: 1 WGVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXK 180
WGVN PAH V+IKGT+ Y+ ++ ++++ DV+QM+GRAGRPQ+D G +++
Sbjct: 841 WGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSEL 900
Query: 181 NFYXKFLYEPFPVESSLLEVLADHLNAEIVAGTVQTKQDILHYLTWTYFFRRLLKNPSYY 360
+Y + E P+ES + LAD LNAEIV GTVQ ++ H+L +TY + R+++NP+ Y
Sbjct: 901 QYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRNPTLY 960
Query: 361 NL--ESLEPQDV-NHFLSGLVQTSLDALCAAFCVEIEQDERTVHSTWMGRIXSYYYLSHR 531
L ++L V + L+ ++ L V+ ++ T +GRI SYYY++H
Sbjct: 961 GLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHG 1020
Query: 532 TMAHFSXNLNGNMNVDDLLRVLSDSEEYATLPVRHNEDL 648
T+A ++ +L M DL R+ S S+E+ + VR +E +
Sbjct: 1021 TIATYNEHLKPTMGDIDLYRLFSLSDEFKYVTVRQDEKM 1059
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein helicase,
putative
Length = 2172
Score = 194 bits (472), Expect = 6e-50
Identities = 90/215 (41%), Positives = 134/215 (62%)
Frame = +1
Query: 1 WGVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXK 180
WG AHLVV+ GT +YDG++ + D PI+++LQMMGR RP D+ G V+ H K
Sbjct: 1680 WGTPLKAHLVVVMGTHFYDGRENSHSDYPISNLLQMMGRGSRPLLDDAGKCVIFCHAPRK 1739
Query: 181 NFYXKFLYEPFPVESSLLEVLADHLNAEIVAGTVQTKQDILHYLTWTYFFRRLLKNPSYY 360
+Y KFLYE PVES L L D+ NAE+VA ++ KQD + YLTW++ +RRL +NP+YY
Sbjct: 1740 EYYKKFLYEALPVESHLQHFLHDNFNAEVVARVIENKQDAVDYLTWSFMYRRLPQNPNYY 1799
Query: 361 NLESLEPQDVNHFLSGLVQTSLDALCAAFCVEIEQDERTVHSTWMGRIXSYYYLSHRTMA 540
NL + + ++ LS LV+ +L L + C+EI+ +E + +G I SYYY+++ T+
Sbjct: 1800 NLLGVSHRHLSDHLSELVENTLSDLEVSKCIEID-NELDLSPLNLGMIASYYYINYTTIE 1858
Query: 541 HFSXNLNGNMNVDDLLRVLSDSEEYATLPVRHNED 645
FS L + LL +L+ + EY +P+R E+
Sbjct: 1859 RFSSLLASKTKMKGLLEILTSASEYDLIPIRPGEE 1893
Score = 164 bits (398), Expect = 5e-41
Identities = 79/219 (36%), Positives = 132/219 (60%), Gaps = 3/219 (1%)
Frame = +1
Query: 1 WGVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXK 180
WGVN PAH V+IKGT+ Y+ ++ ++++ DV+QM+GRAGRPQ+D +G +++
Sbjct: 842 WGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIITGYSKL 901
Query: 181 NFYXKFLYEPFPVESSLLEVLADHLNAEIVAGTVQTKQDILHYLTWTYFFRRLLKNPSYY 360
+Y + + E P+ES + LAD LNAEIV GT+Q ++ H+L +TY + R+++NP+ Y
Sbjct: 902 QYYLRLMNEQLPIESQFISKLADQLNAEIVLGTIQNAREACHWLGYTYLYVRMVRNPTLY 961
Query: 361 NLE-SLEPQD--VNHFLSGLVQTSLDALCAAFCVEIEQDERTVHSTWMGRIXSYYYLSHR 531
+ +D + + L+ ++ L ++ ++ T +GRI SYYY+SH
Sbjct: 962 GVSPDALAKDLLLEERRADLIHSAATILDKNNLIKYDRKSGHFQVTDLGRIASYYYISHG 1021
Query: 532 TMAHFSXNLNGNMNVDDLLRVLSDSEEYATLPVRHNEDL 648
T+A ++ NL MN +L R+ S SEE+ + VR +E +
Sbjct: 1022 TIAAYNENLKPTMNDIELCRLFSLSEEFKYVTVRQDEKM 1060
>At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative
similar to SP|P51979 ATP-dependent DNA helicase MER3 (EC
3.6.1.-) {Saccharomyces cerevisiae}; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF02889: Sec63
domain
Length = 1113
Score = 84.6 bits (200), Expect = 5e-17
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 1/183 (0%)
Frame = +1
Query: 97 VLQMMGRAGRPQFDNEGVAVVLVHDQXKNFYXKFLYEPFPVESSLLEVLADHLNAEIVAG 276
++ + RAGRP FD+ G+ +++ + + Y L VES LL L +HL AEIV
Sbjct: 379 IVPLYYRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTAEIVQL 438
Query: 277 TVQTKQDILHYLTWTYFFRRLLKNPSYYNLESLEPQD-VNHFLSGLVQTSLDALCAAFCV 453
T+ + ++ +Y + R+ KNP Y ++ P+D V L L ++ L +
Sbjct: 439 TISDITRAIEWMKCSYLYVRMKKNPENYAIKKGIPKDRVEKHLQELCLQKINELSQYQMI 498
Query: 454 EIEQDERTVHSTWMGRIXSYYYLSHRTMAHFSXNLNGNMNVDDLLRVLSDSEEYATLPVR 633
+ D + GR+ + YYL TM + N + ++D+ L ++ +EE + + +R
Sbjct: 499 WTDTDGFVLKPEEPGRLMTKYYLKFETMKYI-INTPTSYSLDEALHIVCHAEEISWIQLR 557
Query: 634 HNE 642
NE
Sbjct: 558 RNE 560
>At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA
helicase, putative nearly identical to HUA enhancer 2
[Arabidopsis thaliana] GI:16024936
Length = 995
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +1
Query: 4 GVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQ 174
G+N PA VV + +DG RY+ + +QM GRAGR D G+ ++++ +Q
Sbjct: 438 GLNMPAKTVVFTAVKKWDGDSHRYIGSG--EYIQMSGRAGRRGKDERGICIIMIDEQ 492
>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar
to SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1347
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/57 (42%), Positives = 31/57 (54%)
Frame = +1
Query: 4 GVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQ 174
GVN PA VV +DGK+ R + +P + QM GRAGR D G VV+ D+
Sbjct: 742 GVNAPARTVVFDALRKFDGKEFRQL-LP-GEYTQMAGRAGRRGLDKTGTVVVMCRDE 796
>At1g59760.1 68414.m06729 ATP-dependent RNA helicase, putative
similar to SP|P47047 ATP-dependent RNA helicase DOB1
{Saccharomyces cerevisiae}, HUA enhancer 2 [Arabidopsis
thaliana] GI:16024936; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 988
Score = 41.5 bits (93), Expect = 5e-04
Identities = 28/86 (32%), Positives = 44/86 (51%)
Frame = +1
Query: 4 GVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXKN 183
G+N PA VV +DG + R++ + +QM GRAGR D G+ +++V ++
Sbjct: 422 GLNMPAKTVVFTNVRKFDGDKFRWLSSG--EYIQMSGRAGRRGIDKRGICILMVDEK--- 476
Query: 184 FYXKFLYEPFPVESSLLEVLADHLNA 261
EP V S+L+ AD LN+
Sbjct: 477 ------MEP-AVAKSMLKGSADSLNS 495
>At4g14790.1 68417.m02274 ATP-dependent RNA helicase, mitochondrial
(SUV3) identical to mitochondrial RNA helicase
[Arabidopsis thaliana] GI:5823579; contains Pfam profile
PF00271: Helicase conserved C-terminal domain
Length = 571
Score = 33.9 bits (74), Expect = 0.095
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +1
Query: 4 GVNFPAHLVVIKGTEYYDGKQKRYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDQXKN 183
G+N ++ + YDG + R D+ ++++ Q+ GRAGR Q V +H +
Sbjct: 316 GLNLNISRIIFSTLQKYDGSETR--DLTVSEIKQIAGRAGRFQSKFPIGEVTCLHKEDLP 373
Query: 184 FYXKFLYEPFPV 219
L P P+
Sbjct: 374 LLHSSLKSPSPI 385
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 31.5 bits (68), Expect = 0.51
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = -3
Query: 409 DPTGNGSRLAAPSSPNCNTRDFLVTSGRNRSTSNNVGCLVLFAPCRRRSQRSDDPPTLRA 230
+P +R PS+ N + + VTS R TS V+ + + +SD+PP +
Sbjct: 810 EPPITSTRPDRPSATNLTSDESPVTSTRQAKTSPAPVTPVILNQRQTTNMKSDEPPVIST 869
Query: 229 DSIRPGTVRI 200
+R + R+
Sbjct: 870 RPLRTSSARV 879
>At2g05360.1 68415.m00564 hypothetical protein
Length = 358
Score = 30.7 bits (66), Expect = 0.88
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = -2
Query: 494 IHVLWTVRSSCSISTQKAAHKAS----SEVWT--RPDRKWFTSCGSKLSKL*YEGFFSN 336
+H LW ++SSC + K S VWT DR + + GSK S+L EG +N
Sbjct: 178 VHGLWVLKSSCGKAWIKVKDIKSIGLGQIVWTPSNDDRGYLANQGSKRSRLLKEGHTNN 236
>At3g32130.1 68416.m04091 hypothetical protein
Length = 214
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 488 VLWTVRSSCSISTQKAAHKASSEVWTRPDRKWFTSC 381
++WT+ S+ +I T++ + WTRP ++ F C
Sbjct: 81 LVWTIDSTTNIQTRQVQSRTHHSAWTRP-KEDFVKC 115
>At3g28910.1 68416.m03608 myb family transcription factor (MYB30)
identical to myb-like protein GB:AJ007289 [Arabidopsis
thaliana] (Plant J. 20 (1), 57-66 (1999))
Length = 323
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 365 WRAWSRKT*TISCRVSSKLHWTLYARPFAWKSN 463
WRA T + C S +L WT Y RP + N
Sbjct: 37 WRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGN 69
>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
putative similar to SP|Q03460 Glutamate synthase [NADH],
chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
{Medicago sativa}
Length = 2208
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 364 LESLEPQDVNHFLSGLVQTSLDALCAAFCVE 456
+ES EP++V+HF + LV DA+C VE
Sbjct: 789 VESAEPREVHHFCT-LVGFGADAICPYLAVE 818
>At3g63010.1 68416.m07078 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 358
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 4 GVNFPAHLVVIKGTEYYDGKQKRYVD 81
GVNFP LVV+ G + Q YVD
Sbjct: 275 GVNFPKSLVVVAGLDLVQDWQLAYVD 300
>At4g32060.1 68417.m04563 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 498
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 544 FSXNLNGNMNVDDLLRVLSDSEEYATLPV 630
F N +GN++VD+ LRVL E P+
Sbjct: 449 FDSNQDGNLSVDEFLRVLHRRERDVAQPI 477
>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
domain-containing protein / sec63 domain-containing
protein similar to SP|Q9UGP8 Translocation protein SEC63
homolog {Homo sapiens}; contains Pfam profiles PF00226
DnaJ domain, PF02889 Sec63 domain
Length = 702
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = +1
Query: 517 YLSHRTMAHFSXNLNGNMNVDDLLRVLSDSEEYATLPVRHNED 645
Y+ H+T++ + + ++ ++ V + + EY +PVR +D
Sbjct: 223 YVMHQTLSAYYYLMKPSLAPSKVMEVFTKAAEYMEIPVRRTDD 265
>At1g74650.1 68414.m08645 myb family transcription factor (cY13)
similar to myb protein cY13 GI:928930 from [Arabidopsis
thaliana]; contains Pfam profile: PF00249 myb
DNA-binding domain; identical to cDNA cY13 gene
GI:928929
Length = 330
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 365 WRAWSRKT*TISCRVSSKLHWTLYARPFAWKSN 463
WR+ T + C S +L WT Y RP + N
Sbjct: 37 WRSVPANTGLLRCSKSCRLRWTNYLRPGIKRGN 69
>At1g08810.1 68414.m00981 myb family transcription factor (MYB60)
Length = 280
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 365 WRAWSRKT*TISCRVSSKLHWTLYARPFAWKSN 463
WR+ T + C S +L WT Y RP + N
Sbjct: 37 WRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGN 69
>At5g15310.1 68418.m01793 myb family transcription factor contains
PFAM profile: myb DNA-binding domain PF00249
Length = 326
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 365 WRAWSRKT*TISCRVSSKLHWTLYARPFAWKSNRMNVQ 478
WR+ K C S +L WT Y RP K + N+Q
Sbjct: 37 WRSLPEKAGLHRCGKSCRLRWTNYLRPDI-KRGKFNLQ 73
>At1g66230.1 68414.m07517 myb family transcription factor (MYB20)
similar to myb-related transcription factor GI:1430846
from [Lycopersicon esculentum]; contains PFAM profile:
Myb DNA binding domain PF00249
Length = 282
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 365 WRAWSRKT*TISCRVSSKLHWTLYARP 445
WRA + + + C S +L WT Y RP
Sbjct: 37 WRAVPKLSGLLRCGKSCRLRWTNYLRP 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,592,659
Number of Sequences: 28952
Number of extensions: 269616
Number of successful extensions: 839
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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