Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_K11
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1013 - 7931756-7935109 30 1.4
09_06_0206 - 21580240-21580467,21580544-21580591,21581533-215823... 29 4.2
05_05_0272 - 23738514-23738817,23739382-23740748 29 4.2
08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622... 28 5.6
01_07_0308 + 42649617-42649631,42650585-42650640,42652683-426530... 28 5.6
07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136... 28 7.4
10_07_0001 + 11698408-11698785,11698883-11699809 27 9.8
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 27 9.8
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +2
Query: 239 AIGPDNIIXIGKHNVTIWCNDQTCTT---MKCDR-ISCRNVTCNIYDTDITGXCXEYNTI 406
A PD + GK + C D+T +CDR + CR C TG C + N +
Sbjct: 286 AFAPDRLCPCGKQTIVRRCADRTTPVTCGQRCDRLLPCRRHRCE--KVCHTGPCGDCNVL 343
Query: 407 TPA 415
A
Sbjct: 344 ISA 346
>09_06_0206 -
21580240-21580467,21580544-21580591,21581533-21582321,
21582779-21582979
Length = 421
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 470 LKPTTTIIISTLQPSSVPIASGLEXV 547
LKP +++ST+ PS P+ SG +
Sbjct: 176 LKPENVLLVSTINPSKDPVRSGFTPI 201
>05_05_0272 - 23738514-23738817,23739382-23740748
Length = 556
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/86 (26%), Positives = 38/86 (44%)
Frame = +2
Query: 266 IGKHNVTIWCNDQTCTTMKCDRISCRNVTCNIYDTDITGXCXEYNTITPADTSRPTEVNT 445
+ +H+V ++ T + D NV NI++ G + ++PA + R E N
Sbjct: 476 VSRHSVQVYPRSWTAIMLTFDNAGMWNVRSNIWERHYLGEQLYISVVSPARSLR-DEYN- 533
Query: 446 KPENDLSTLKPTTTIIISTLQPSSVP 523
PEN L K ++ L PS +P
Sbjct: 534 MPENALRCGK----VVGLPLPPSYLP 555
>08_01_0704 +
6219530-6219609,6221595-6222243,6222339-6222437,
6222521-6222616,6222750-6222848,6222929-6223027,
6223811-6223882,6224508-6224597,6225173-6227329
Length = 1146
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 530 SGLEXVNSTVEERPLQLEAVLSSTVMGTDNLGSKD 634
SGL +NSTVE + L S + G N+ S +
Sbjct: 44 SGLVRINSTVESNEVSLSKTRSGLIRGNTNVRSNE 78
>01_07_0308 +
42649617-42649631,42650585-42650640,42652683-42653096,
42653180-42653292,42653438-42653886,42653967-42654056
Length = 378
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +3
Query: 498 RPYNP-RLCQLLVDLXKLIPRS-KNDPYNW-KLFYRLQLWEPIIW 623
+PY+ +LC+ ++ L+P S K + W +L +++ W+P IW
Sbjct: 326 KPYHYLKLCKNIIKHWWLLPESVKVECKTWQRLIQKMETWDPKIW 370
>07_03_0336 +
16911947-16912144,16912636-16912692,16912917-16913696,
16914666-16914713,16914795-16916032,16916776-16916860,
16917323-16917379
Length = 820
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 464 STLKPTTTIIISTLQPSSVPIASGLE 541
S LK ++IST+ PS PI SGL+
Sbjct: 192 SDLKLENILLISTIDPSKDPIRSGLK 217
>10_07_0001 + 11698408-11698785,11698883-11699809
Length = 434
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = -1
Query: 319 HSCASLIIAPYCNVMFTDXYNVVWSYSE*LIATRS*FRFT*TPPCERVSYPSPYSRPDPT 140
++C L+I CN +D ++ + Y A RS TP +R + P P P
Sbjct: 141 YACGGLVIGTACNHQVSDGQSMSFFYVAWAAAVRSAGATLPTPFVDRAAIAVPRGPPAPA 200
Query: 139 TPKR 128
R
Sbjct: 201 FDHR 204
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 434 EVNTKPENDLSTLKPTTTIIISTLQPSSVPIASGLEXVNSTVEERPLQLEAVLSS 598
EV E+DL T I +++ +G++ +TVE+ P++ EAV+ S
Sbjct: 1785 EVEETREDDLGDKDDMETHIDASMDIQGQDAETGIDNDATTVEDVPVKSEAVMES 1839
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,951,740
Number of Sequences: 37544
Number of extensions: 360059
Number of successful extensions: 1003
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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