Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K11
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)                 34   0.087
SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.20 
SB_47342| Best HMM Match : VWA (HMM E-Value=0)                         31   0.81 
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_11749| Best HMM Match : UPF0254 (HMM E-Value=0.71)                  30   1.9  
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)                    30   1.9  
SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29)                  29   2.5  
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               29   3.3  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.3  
SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_54733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
          Length = 1299

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
 Frame = +2

Query: 338  CRNVTCNIYDTDITGXC-XEYNTITPADTSRPTEVNTKPENDLSTLKPTTTIIISTLQPS 514
            C + T +  D   TG C    +T+   DTS  + V       +ST+K   T ++ST++  
Sbjct: 1044 CFSQTSDASDQPATGECYASTSTVKDGDTSVVSTVKDGDTPVVSTVKDGDTPVVSTVKDG 1103

Query: 515  SVPIASGLEXVNSTVEERPLQLEAVLSSTVMGTD 616
              P+ S ++  ++ V       +  + STV   D
Sbjct: 1104 DTPVVSTVKDGDTPVVSTVKDGDTPVVSTVKDGD 1137


>SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 284 TIWCNDQTCTTMKCDRISCRNVTCNIYDTDITGXCXEYNTI 406
           TI CN   C T++C+   C    CN    +      + NTI
Sbjct: 190 TIQCNTLQCNTIQCNTTQCNTTQCNTIQGNTARNTAQCNTI 230



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 284 TIWCNDQTCTTMKCDRISCRNVTCN 358
           T  CN   C T++C+ I C    CN
Sbjct: 185 TAQCNTIQCNTLQCNTIQCNTTQCN 209



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +2

Query: 284 TIWCNDQTCTTMKCDRISCRNVTCNIYDTDITGXC 388
           T  CN   C T +C+   C    CN    + T  C
Sbjct: 259 TAQCNTTECNTAQCNTTQCNTAQCNTTQCNTTQCC 293



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +2

Query: 296 NDQTCTTMKCDRISCRNVTCNIYDTDITGXCXEYNTITPADTSRPTEVNTKPENDL 463
           N   C T++C+ + C  + CN    + T    + NTI         + NT   N L
Sbjct: 184 NTAQCNTIQCNTLQCNTIQCNTTQCNTT----QCNTIQGNTARNTAQCNTIQCNTL 235



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +2

Query: 284 TIWCNDQTCTTMKCDRISCRNVTCNIYDTDITGXCXEYNTI 406
           TI  N   C T +C+   C    CN    +      + NTI
Sbjct: 151 TIQGNTAQCNTAQCNTTQCNTAQCNTIQGNTARNTAQCNTI 191



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = +2

Query: 284 TIWCNDQTCTTMKCDRISCRNVTCNIYDTDITGXC 388
           T  CN   C T +C+   C    CN      T  C
Sbjct: 264 TTECNTAQCNTTQCNTAQCNTTQCNTTQCCNTTQC 298


>SB_47342| Best HMM Match : VWA (HMM E-Value=0)
          Length = 483

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = +2

Query: 404 ITPADTSRPTEVNTKPENDLSTLKPTTTIIISTLQPSSVPIASGLEXVNSTVE 562
           IT   TSRPT ++T      ST + TT    ST+ P+S PI +G+E  +   E
Sbjct: 257 ITTIPTSRPTRLSTP-----STRRKTTRRA-STIPPTSRPITTGVETTSLITE 303


>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
 Frame = +2

Query: 293 CNDQ---TCTTMKCDRISCRNVTCNIYDTDITGXCXEYNTITPADTSRPTEVNTKPENDL 463
           CNDQ   TC       +S             T       T+TP  ++  TE  T      
Sbjct: 406 CNDQGMITCPDATTKDVSSTETVSVTSAPTATLTSAPTATVTPTASNAFTETTTVTSTTT 465

Query: 464 STLKPTTTIIISTLQPSSVPIASGLEXVNSTVEERP 571
            T+ P  T   S++ PSS P A+G   + +     P
Sbjct: 466 ITVLPQPTSASSSITPSSTP-ATGTATIATATYSVP 500


>SB_11749| Best HMM Match : UPF0254 (HMM E-Value=0.71)
          Length = 405

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 284 TIWCNDQTCTTMKCDRISCRNVTCNIYDTDITGXCXEYNTIT 409
           T+  ND    T KC R  C    CNI  T I G   E  ++T
Sbjct: 301 TLTPNDLEPGTFKCSRKRCTTCNCNIPTTRIIGPNRESYSVT 342


>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
          Length = 575

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +2

Query: 407 TPADTSRPTEVNTKPENDLSTLKPTTT-IIISTLQPSSVPIA---SGLEXVNSTVEERPL 574
           T   T+ PT   T  +  ++T  PTT    + T +P++ P     + LE  +    ERPL
Sbjct: 9   TTESTAVPTTAPTTEQTTVATTIPTTIPTTVPTTEPTTAPTTPEPTTLEPTDPPTTERPL 68

Query: 575 QLE 583
            +E
Sbjct: 69  TME 71


>SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29)
          Length = 212

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
 Frame = +2

Query: 269 GKHNVTIWCNDQTCTT-MKCDRISCRNVT----CNIYDTDITGXCXEYNTITPADTSRPT 433
           G  +  +W  D   +T M C +     +     C      + G C     + PA +S+P 
Sbjct: 74  GGVHAAVWVPDSEASTCMSCMKTKFTAINRRHHCRKCGAVVCGACSTKKFLLPAQSSKPL 133

Query: 434 EVNTKPENDLSTLKP 478
            V     N LS  KP
Sbjct: 134 RVCNSCYNTLSNTKP 148


>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 401  TITPADTSRPTEVNTKPENDLSTLKPTTTIIISTLQPSSVPIASGLEXVNSTV 559
            TI+P   +  TE    P + L T +PTT +  +T+ P +    S    V +T+
Sbjct: 1143 TISPKTETSITEATKPPVDQLKTKQPTTILGETTIVPETTIPESTAAPVETTI 1195


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 513  EGCRV-DIIIVVVGFNVDRSFSGLVLTSVGLDVSA 412
            E  RV D+++ V+  + D   +G V+ S+GLD+ A
Sbjct: 1898 ENSRVGDVVLTVIAVDADEGSNGDVVYSLGLDIGA 1932


>SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
 Frame = +2

Query: 305 TCTTMKCDRISCRNVTCNI----YDTD--ITGXCXEYNTITPADTSRPTEVNTKPENDLS 466
           +C T  C   +C    C++    ++TD  +T  C  + T   A     T   ++    L 
Sbjct: 325 SCHTTDCHVTNCHTTDCHVTNSCHNTDCHVTNSC--HTTDCHATNCHNTTAMSQTVVTLQ 382

Query: 467 TLKPTTTIIISTLQPSSVPIASGLE----XVNSTVEERPLQLEAVLSSTV 604
           T+   T + + T    +V I + +      + + + +  + L+ V+S TV
Sbjct: 383 TVMSQTVVTLQTAMSQTVTIQTVMSQTVVTIQTVMSQTVVTLQTVMSQTV 432


>SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 149 GSTIWGWITYPFTWWSSGEPELAPGSDQL-LAIGPDNIIXIGKHNVTIWCNDQ 304
           G  +W  +T+ F  +  GE  L      + L    DN++   KHNVTI  N Q
Sbjct: 251 GMWLWSIVTFSFGLFLRGEEPLRLKVKHIKLPPNFDNLVWGDKHNVTIMSNLQ 303


>SB_54733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 2/110 (1%)
 Frame = +2

Query: 239 AIGPDNII--XIGKHNVTIWCNDQTCTTMKCDRISCRNVTCNIYDTDITGXCXEYNTITP 412
           A+ PDN     +   N T+   +   TT  CD +   N TC+  D D T         T 
Sbjct: 63  AVDPDNTTRDAVDPDNTTLDAVEPDNTT--CDAVEPDNTTCDAVDPDNTTRDDVDPDNTT 120

Query: 413 ADTSRPTEVNTKPENDLSTLKPTTTIIISTLQPSSVPIASGLEXVNSTVE 562
            D   P           +T  P  T  +  ++P +  I   L+  N+T++
Sbjct: 121 RDALDPDNTTLDAVEPDNTTYPDNT-TLDAVEPDNTTI-DALDPDNTTLD 168


>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 464 STLKPTTTIII---STLQPSSVPIASGLEXVNSTVEERPLQLEAVLSSTVMGTDNLGSK 631
           S L P+ T+ I   S+LQP +  +AS     ++T         A +SST   T  LG +
Sbjct: 275 SRLFPSATVSITPISSLQPPTFTVASSSSSTSATTSNIASSAPAPISSTASTTTLLGQQ 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,062,983
Number of Sequences: 59808
Number of extensions: 429819
Number of successful extensions: 1413
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)