Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K11
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 143 HDPETGHVQSSVCLDNRALSTSK 75
           HD E  H++ ++ ++  +L TSK
Sbjct: 153 HDIENAHIRRTLHMNRTSLKTSK 175


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/57 (22%), Positives = 23/57 (40%)
 Frame = +2

Query: 410 PADTSRPTEVNTKPENDLSTLKPTTTIIISTLQPSSVPIASGLEXVNSTVEERPLQL 580
           P  + RP   +    N LST       ++   Q   VP+    + +  +   +P+QL
Sbjct: 205 PVGSVRPKFPSMDNINGLSTESKADLPLLCPAQGFPVPVHRWYKFIEGSSRRQPVQL 261


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 167 WITYPFTWWS 196
           ++TY + WWS
Sbjct: 519 YLTYEYPWWS 528


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 167 WITYPFTWWS 196
           ++TY + WWS
Sbjct: 572 YLTYEYPWWS 581


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,649
Number of Sequences: 438
Number of extensions: 3978
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)