Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_K10
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 27 3.1
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 5.4
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 26 5.4
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 26 5.4
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 25 7.1
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 9.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 9.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 9.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 9.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.4
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 157 SSGSILSRNHFLEYRSPLFIVFVHNTLYL 71
SSG I+ NH +YR ++ VH YL
Sbjct: 343 SSGCIIEDNHVFKYRHLPYLASVHPFSYL 371
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 471 ICKRLCNRFFVCXWVLRTELGF 406
+CK LCN F W + E+ F
Sbjct: 1332 LCKALCNTIFPILWRPKEEINF 1353
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 177 KNFGRSVVLEA-FYREITFWSTVRHYLLFSYTIHYIYTQISL 55
K F + + EA FY +I F S+ H + SY+ HY ++L
Sbjct: 278 KEFATAKIPEASFYGKIIFSSSGPHIQVASYSGHYYRFAVNL 319
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 193 GMVD-QTDVEVIIRAQKNMLQRFEKTTEMLTNCNQLS 300
G +D TD+ + R +L+ FE T +TN N+LS
Sbjct: 70 GPIDPNTDINQVPREPYRLLKEFEWATIDVTNDNELS 106
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -3
Query: 217 QRQSDPPYRXGLEQKLRAQCSSGSILSRNHFLEYRSPLFI 98
+R DP LE + S GS+ S H + +P F+
Sbjct: 421 ERPRDPASYNALENRSELSASPGSVSSSRHSGIFATPTFL 460
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 238 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 363
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 238 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 363
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 238 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 363
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 238 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 363
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 238 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 363
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 238 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 363
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 238 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 363
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 238 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 363
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 238 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 363
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 238 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 363
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,069
Number of Sequences: 5004
Number of extensions: 46152
Number of successful extensions: 120
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -