Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_K10
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58620| Best HMM Match : XH (HMM E-Value=1.6) 82 4e-16
SB_12316| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_5832| Best HMM Match : Sof1 (HMM E-Value=3) 30 1.9
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 28 7.5
SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37) 27 9.9
SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37) 27 9.9
SB_18627| Best HMM Match : Histone (HMM E-Value=1.7e-30) 27 9.9
SB_30056| Best HMM Match : Linker_histone (HMM E-Value=2.4e-37) 27 9.9
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 27 9.9
SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073) 27 9.9
>SB_58620| Best HMM Match : XH (HMM E-Value=1.6)
Length = 376
Score = 81.8 bits (193), Expect = 4e-16
Identities = 42/134 (31%), Positives = 72/134 (53%)
Frame = +1
Query: 154 NYTAPEVFVQGLXGMVDQTDVEVIIRAQKNMLQRFEKTTEMLTNCNQLSASRLRAASTEF 333
N A + F + + M + DV+ + Q L +FEKT E N N LS+ R F
Sbjct: 41 NTLAADEFCRRMSKMASKEDVKTMETLQIKALTKFEKTNETFQNFNHLSSIRYEVLDHRF 100
Query: 334 KKHTQLLFEMRKDLEFIFKKIRAIKTKLSSQYPXAYKEAVAESLANRKPLVXDEXLKPSX 513
K HT++L +M+KDL+ +F++IR +K+KLS QY A+ + + ++ + LV ++ +
Sbjct: 101 KNHTRMLLDMKKDLDIVFRRIRTLKSKLSKQYGEAFL-STSVNIKKLEELVAEDQEEEKP 159
Query: 514 EKPESKMVATVSTE 555
++P T + E
Sbjct: 160 DRPGRDRTTTSTDE 173
>SB_12316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/73 (26%), Positives = 38/73 (52%)
Frame = +1
Query: 196 MVDQTDVEVIIRAQKNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEMRKDL 375
M + VE ++ +K++L+ E + + + ++LR ST +KK Q L E+R +
Sbjct: 366 MDELASVEQELQKKKDLLKESEGAEVLKGDEFKRYVNKLRGKSTVYKKKRQELAELRAEY 425
Query: 376 EFIFKKIRAIKTK 414
+ + + +KTK
Sbjct: 426 GVLSRSVEILKTK 438
>SB_5832| Best HMM Match : Sof1 (HMM E-Value=3)
Length = 232
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +1
Query: 256 FEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLF--EMRKDLEFIFKKIRAIKTKLSSQY 429
FE TTE + + ++ L + T + TQ+L E+R D I + R +K + Q+
Sbjct: 152 FEHTTEKVNHHHKGVRFNLETSQTPRGRDTQMLAGSELRSDSPLIAQGTRLMKITNTQQH 211
Query: 430 PXAYKEAVAESLANRKP 480
P + A N P
Sbjct: 212 PTLSRRHTAPLRLNASP 228
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 205 QTDVEVIIRAQKNMLQRFEKTTEMLTNCNQLSASRLR---AASTEFKKHTQLLFEMRKDL 375
+TD+ + RA+ N Q+F + + L CN + ++ A TE ++ L E +K L
Sbjct: 60 RTDMTGLRRARVNAEQQFSQIEKQLITCNTKLDTEMKQHVRAKTELEETKTALIEKQKRL 119
Query: 376 E 378
+
Sbjct: 120 Q 120
>SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)
Length = 184
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +1
Query: 319 ASTEFKKHTQLLFEMRKDLEFIFKKIRAIKTKLSSQYPXAYKEAVAESLANRKPLVXDEX 498
AS FK + + + +K + + KK +A K + + P + A +KP
Sbjct: 83 ASGSFKLNKAAVEKPKKAKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKKPA 142
Query: 499 LKPSXEKPESKMVA 540
K + +KP +K A
Sbjct: 143 AKKATKKPAAKKAA 156
>SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37)
Length = 184
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +1
Query: 319 ASTEFKKHTQLLFEMRKDLEFIFKKIRAIKTKLSSQYPXAYKEAVAESLANRKPLVXDEX 498
AS FK + + + +K + + KK +A K + + P + A +KP
Sbjct: 83 ASGSFKLNKAAVEKPKKAKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKKPA 142
Query: 499 LKPSXEKPESKMVA 540
K + +KP +K A
Sbjct: 143 AKKATKKPAAKKAA 156
>SB_18627| Best HMM Match : Histone (HMM E-Value=1.7e-30)
Length = 279
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/88 (21%), Positives = 38/88 (43%)
Frame = +1
Query: 277 LTNCNQLSASRLRAASTEFKKHTQLLFEMRKDLEFIFKKIRAIKTKLSSQYPXAYKEAVA 456
+++ +L +++ AS FK + +K + + KK +A K + + P +
Sbjct: 164 MSDKGKLVHTKVVGASGSFKLDKAAVENPKKAKKPVAKKPKAAKKPAAKKSPKKAAAKKS 223
Query: 457 ESLANRKPLVXDEXLKPSXEKPESKMVA 540
A +KP K + +KP +K A
Sbjct: 224 PKKAAKKPAAKKPAAKKAAKKPAAKKAA 251
>SB_30056| Best HMM Match : Linker_histone (HMM E-Value=2.4e-37)
Length = 184
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +1
Query: 319 ASTEFKKHTQLLFEMRKDLEFIFKKIRAIKTKLSSQYPXAYKEAVAESLANRKPLVXDEX 498
AS FK + + + +K + + KK +A K + + P + A +KP
Sbjct: 83 ASGSFKLNKAAVEKPKKAKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKKPA 142
Query: 499 LKPSXEKPESKMVA 540
K + +KP +K A
Sbjct: 143 AKKAAKKPAAKKAA 156
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +1
Query: 226 IRAQKNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEMRKDLEFIFKKIRAI 405
I A++N++QR + L N Q L + E ++H Q + D KI +
Sbjct: 356 IAAKENLIQRLKTAKASLENEVQAVKRELAGSQRECERHLQDRLQFEYDASSYRSKISKL 415
Query: 406 KTKLSSQ 426
+ L ++
Sbjct: 416 EADLENE 422
>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
Length = 863
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 276 HFCCFFKSLQHILLCSNNHFNVSLIHHTG*ALNKNFGRSVVLE 148
H+CC F S+Q L+ NN NV H T +L ++LE
Sbjct: 198 HYCCAFPSIQ--LITVNNAVNVLEKHSTKRSLQGLNKEEIMLE 238
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,284,805
Number of Sequences: 59808
Number of extensions: 336951
Number of successful extensions: 968
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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