Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K10
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29130.1 68416.m03647 expressed protein ; expression supporte...    57   9e-09
At5g48600.1 68418.m06011 structural maintenance of chromosomes (...    34   0.094
At3g16340.1 68416.m02066 ABC transporter family protein similar ...    32   0.29 
At4g35070.1 68417.m04978 expressed protein                             29   2.7  
At2g29940.1 68415.m03642 ABC transporter family protein similar ...    29   2.7  
At3g13420.1 68416.m01687 expressed protein                             28   4.7  
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR...    27   8.1  

>At3g29130.1 68416.m03647 expressed protein ; expression supported
           by MPSS
          Length = 185

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
 Frame = +1

Query: 199 VDQTDVEVIIRAQKNM--LQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEMRKD 372
           +D TDV  +     N   + R + +  +L++ N+ + +     S EF + T+LL  M+ D
Sbjct: 84  LDSTDVSSLYAVAVNGYGVYRLQDSNAVLSHYNEFAENCFSDVSLEFARSTRLLKSMKAD 143

Query: 373 LEFIFKKIRAIKTKLSSQYPXAYKEAVAESLANRKP 480
           L++IF K+R+IK+K+ + YP A+ +       +R+P
Sbjct: 144 LDYIFLKLRSIKSKILATYPDAFPDDSTSDAFDRRP 179


>At5g48600.1 68418.m06011 structural maintenance of chromosomes
           (SMC) family protein similar to SP|P50532 Chromosome
           assembly protein XCAP-C {Xenopus laevis}; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1241

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
 Frame = +1

Query: 211 DVEVIIRAQKNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEMRKDLEFIFK 390
           D  V +      L++FE   E      ++  + LRA   +FK+  +   + R+DL+ + +
Sbjct: 292 DERVKMDESNEELKKFESVHEKHKKRQEVLDNELRACKEKFKEFERQDVKHREDLKHVKQ 351

Query: 391 KIRAIKTKL---SSQYPXAYKEAVAES-----LANRKPLVXDEXLKPSXEKPESKMVATV 546
           KI+ ++ KL   SS+     KE+   S     L    P +    L    +  E K +A V
Sbjct: 352 KIKKLEDKLEKDSSKIGDMTKESEDSSNLIPKLQENIPKLQKVLLDEEKKLEEIKAIAKV 411

Query: 547 STE 555
            TE
Sbjct: 412 ETE 414


>At3g16340.1 68416.m02066 ABC transporter family protein similar to
            PDR5-like ABC transporter GI:1514643 from [Spirodela
            polyrhiza]; contains Pfam profile: PF00005 ABC
            transporter
          Length = 1416

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 328  LWMQPLIYWPTADYNLSAFLLFFQISA 248
            LW Q + YW T DYNL+ F  FF ++A
Sbjct: 1145 LWKQWITYWRTPDYNLARF--FFTLAA 1169


>At4g35070.1 68417.m04978 expressed protein 
          Length = 265

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 327 CGCSP*STGRQLITICQHFCCFFKSLQHILLC 232
           C C      R L   C+H CC     + +LLC
Sbjct: 218 CNCGSNGVTRVLFLPCRHLCCCMDCEEGLLLC 249


>At2g29940.1 68415.m03642 ABC transporter family protein similar to
            ABC1 protein GI:14331118 from [Nicotiana plumbaginifolia]
          Length = 1426

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 328  LWMQPLIYWPTADYNLSAFLLFFQISA 248
            LW Q L+YW + +YNL   L+F  I+A
Sbjct: 1157 LWKQNLVYWRSPEYNL-VRLVFTTIAA 1182


>At3g13420.1 68416.m01687 expressed protein
          Length = 242

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 283 LSAFLLFFQISATYSFVLE*SLQRQSDPPYRXG-LEQKLRAQCSSGSILSRNHFLE 119
           LS+ LL+FQI    + +++    RQSD   R   LE  L A+  S     RN FL+
Sbjct: 126 LSSSLLWFQIYRLGASIIDSPFPRQSDSDLRNSFLEPPLLARQRSRDPELRNSFLQ 181


>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1226

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 265 TTEMLTNCNQLSASRLRAASTEFKKHTQLLFEMRK 369
           +T +LTNCN+L  S     S+  ++  QLL + +K
Sbjct: 886 STFILTNCNKLERSAKEEISSFAQRKCQLLLDAQK 920


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,890,190
Number of Sequences: 28952
Number of extensions: 229126
Number of successful extensions: 497
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)