Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K05
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   145   4e-36
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   145   4e-36
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    41   2e-04
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    27   1.6  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    26   3.6  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.8  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   4.8  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   6.3  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   8.3  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  145 bits (352), Expect = 4e-36
 Identities = 70/117 (59%), Positives = 90/117 (76%)
 Frame = +2

Query: 47  RGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRICM*SLSKVIKGRLNRLPAAGSGDMIV 226
           RGRG ++G K+R++LGLP  +         A+ + + S+      RLNRLPAA  GDM++
Sbjct: 3   RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGT-GARLNRLPAASCGDMVL 61

Query: 227 ATVKKGKPELRKKVMPAVVIRQRKPFRXRDGVFIYFEDNAGVIVNNKGEMKGSAITG 397
           ATVKKGKP+LRKK+MPA+V+RQRK +R +DGV++YFEDNAGVIVN KGEMKGSAITG
Sbjct: 62  ATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITG 118



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 396 GPVAKECADLWPR 434
           GPVAKECADLWPR
Sbjct: 118 GPVAKECADLWPR 130


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  145 bits (352), Expect = 4e-36
 Identities = 70/117 (59%), Positives = 90/117 (76%)
 Frame = +2

Query: 47  RGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRICM*SLSKVIKGRLNRLPAAGSGDMIV 226
           RGRG ++G K+R++LGLP  +         A+ + + S+      RLNRLPAA  GDM++
Sbjct: 3   RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGT-GARLNRLPAASCGDMVL 61

Query: 227 ATVKKGKPELRKKVMPAVVIRQRKPFRXRDGVFIYFEDNAGVIVNNKGEMKGSAITG 397
           ATVKKGKP+LRKK+MPA+V+RQRK +R +DGV++YFEDNAGVIVN KGEMKGSAITG
Sbjct: 62  ATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITG 118



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 396 GPVAKECADLWPR 434
           GPVAKECADLWPR
Sbjct: 118 GPVAKECADLWPR 130


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
 Frame = +2

Query: 203 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRXRDGVFIYFEDNAGVI 355
           A  GD +V  VKK +            R  +  A+++R + P R  DG ++ F+DNA V+
Sbjct: 31  ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90

Query: 356 VNNKGEMKGSAITGACSQRM 415
           VN + E  G+ I    +  +
Sbjct: 91  VNKECEPLGTRILSVVANEL 110


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 18  QNFDTTKCLREDVVVPRERNSVSPWVSQLGAVINCADNTGRK 143
           +NF      +  +V P +   V P++S+  A  N ++  G K
Sbjct: 344 RNFKELTMRKRSIVTPEDSEEVYPYISEFVAASNVSEEKGPK 385


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 152 YRFFAPCVV-GAVDYCSQLGDPGRYGISLPRNHHVLS*TFCCIKILKE 12
           Y F++     G +D   +LGD   YGI  P+++   S  + C KI  E
Sbjct: 552 YEFYSRAAAQGDIDAIFKLGDYYYYGIGTPKDY---SKAYTCYKIAYE 596


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 384 EPFISPLLLTMTPALSSKYINTPS 313
           +P+  P+L +  P L   Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 236 KKGKPELRKKVMPAVVIRQRK---PFRXRDGVFIYFEDNA 346
           KKG P  RK   P+++        PF  RD +FI  E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 70  SEIPYLPGSPSWEQ*STAPTTQGAKNLYVIAVQGYQRSP 186
           +E+PY P SP+    S+ P+T   +  + I     Q++P
Sbjct: 242 AEMPYFPISPAISCASSCPSTPDEQKNFFIVGNAPQQTP 280


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 343 IVLKVYKYSITXSERFPLPDDHCRHYLFPEFR 248
           +V +++++     E FPLP       LFP  R
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFPTLR 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,074
Number of Sequences: 5004
Number of extensions: 48646
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)