Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K05
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)          129   2e-30
SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7)              29   3.7  
SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18)                     27   8.6  
SB_58465| Best HMM Match : zf-B_box (HMM E-Value=0.00022)              27   8.6  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score =  129 bits (311), Expect = 2e-30
 Identities = 65/107 (60%), Positives = 81/107 (75%)
 Frame = +2

Query: 47  RGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRICM*SLSKVIKGRLNRLPAAGSGDMIV 226
           RGRGG++G KFRI+LGLP G+          + + + ++ K IKGRLNRLPAA SGDM++
Sbjct: 23  RGRGGTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAV-KGIKGRLNRLPAAASGDMVL 81

Query: 227 ATVKKGKPELRKKVMPAVVIRQRKPFRXRDGVFIYFEDNAGVIVNNK 367
           ATVKKGKPELRKKVMPAVVIRQRK +R ++GVF+YFE N  V V  +
Sbjct: 82  ATVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRVRKQ 128


>SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7)
          Length = 201

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 424 CGRVLPQTRALSLEYTFKISSC 489
           CGR +P  RA+  +Y  K S C
Sbjct: 139 CGRAIPTLRAMRAQYELKASEC 160


>SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18)
          Length = 457

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 29  YNKMSKRGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRIC 151
           YN++S+ G GG  G    + L           +QH  Q +C
Sbjct: 236 YNQLSENGGGGGLGQTLDLPLVGDINGDEMAWQQHDVQELC 276


>SB_58465| Best HMM Match : zf-B_box (HMM E-Value=0.00022)
          Length = 476

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 420 QHILWLQAPVMAEPFISPLLLTMTPALSSKYINT 319
           +H++W    ++  PF  PL   + P LS K + +
Sbjct: 79  RHLVWTAVRILQAPFAYPLTKNVGPRLSIKLLRS 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,243,845
Number of Sequences: 59808
Number of extensions: 392772
Number of successful extensions: 960
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)