Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K05
         (593 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA...   182   3e-46
M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal prot...   167   7e-42

>AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA
           protein.
          Length = 140

 Score =  182 bits (443), Expect = 3e-46
 Identities = 92/120 (76%), Positives = 100/120 (83%)
 Frame = +2

Query: 38  MSKRGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRICM*SLSKVIKGRLNRLPAAGSGD 217
           MSKRGRGG+AG KFRISLGLP G+         A+ + + ++   I+GRLNRLPAAG GD
Sbjct: 1   MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHG-IRGRLNRLPAAGVGD 59

Query: 218 MIVATVKKGKPELRKKVMPAVVIRQRKPFRXRDGVFIYFEDNAGVIVNNKGEMKGSAITG 397
           M VATVKKGKPELRKKVMPAVVIRQRKPFR RDGVFIYFEDNAGVIVNNKGEMKGSAITG
Sbjct: 60  MFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 119



 Score = 35.1 bits (77), Expect = 0.072
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 396 GPVAKECADLWPR 434
           GPVAKECADLWPR
Sbjct: 119 GPVAKECADLWPR 131


>M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal protein
           L17A protein.
          Length = 140

 Score =  167 bits (407), Expect = 7e-42
 Identities = 86/120 (71%), Positives = 94/120 (78%)
 Frame = +2

Query: 38  MSKRGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRICM*SLSKVIKGRLNRLPAAGSGD 217
           MSKRGRGG+AG KFRISLGLP G+         A+ + + ++   I+GRLNRLPAAG GD
Sbjct: 1   MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHG-IRGRLNRLPAAGVGD 59

Query: 218 MIVATVKKGKPELRKKVMPAVVIRQRKPFRXRDGVFIYFEDNAGVIVNNKGEMKGSAITG 397
           M VATVKKGKPELRKKV      RQRKPFR RDGVFIYFEDNAGVIVNNKGEMKGSAITG
Sbjct: 60  MFVATVKKGKPELRKKVSVVPSARQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 119



 Score = 35.1 bits (77), Expect = 0.072
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 396 GPVAKECADLWPR 434
           GPVAKECADLWPR
Sbjct: 119 GPVAKECADLWPR 131


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,890,498
Number of Sequences: 53049
Number of extensions: 598180
Number of successful extensions: 1664
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2400202284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)