Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_K05
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   167   7e-42
U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical pr...    31   0.47 
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    29   3.3  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    29   3.3  
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    28   4.4  
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  167 bits (405), Expect = 7e-42
 Identities = 84/120 (70%), Positives = 96/120 (80%)
 Frame = +2

Query: 38  MSKRGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRICM*SLSKVIKGRLNRLPAAGSGD 217
           MSKRGRGG++GAKFRISLGLP G+         A+ + + S+   I+GRLNRLP+AG GD
Sbjct: 1   MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYG-IRGRLNRLPSAGVGD 59

Query: 218 MIVATVKKGKPELRKKVMPAVVIRQRKPFRXRDGVFIYFEDNAGVIVNNKGEMKGSAITG 397
           M V +VKKGKPELRKKV+  VVIRQRK FR +DG FIYFEDNAGVIVNNKGEMKGSAITG
Sbjct: 60  MFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITG 119



 Score = 35.1 bits (77), Expect = 0.038
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 396 GPVAKECADLWPR 434
           GPVAKECADLWPR
Sbjct: 119 GPVAKECADLWPR 131


>U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical
           protein B0403.5 protein.
          Length = 413

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 157 SHTDSLRPVLSAQLITAPSWETQGDTEFRSRGTTTSSLRHF 35
           S T   RPVL+ + +T  +W T       ++ TTT++LR++
Sbjct: 356 STTPFFRPVLTTRPVTTTTWRTTRRITTTTKPTTTTTLRNY 396


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein
           363, isoform b protein.
          Length = 2692

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 450 SRLRQYAATDQHILWLQAPVMAEPFISPLLLTMTPAL--SSKYINTPSRXLN 301
           +RL Q++A     L  Q+P    P++  L++ M P L    KY    ++ LN
Sbjct: 749 ARLEQHSAKMIAQLAKQSPKFMRPYVGSLMIAMIPKLRNDQKYAEVTAQVLN 800


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein
           363, isoform a protein.
          Length = 2695

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 450 SRLRQYAATDQHILWLQAPVMAEPFISPLLLTMTPAL--SSKYINTPSRXLN 301
           +RL Q++A     L  Q+P    P++  L++ M P L    KY    ++ LN
Sbjct: 749 ARLEQHSAKMIAQLAKQSPKFMRPYVGSLMIAMIPKLRNDQKYAEVTAQVLN 800


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 454 LSLEYTFKISSCVLLSFPSTSKSNPKNYNLRNXHL-QCKCAKLKYT 588
           ++LE  F +++      PSTS S+P N N R   L +C      YT
Sbjct: 443 VNLENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYT 488


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 454 LSLEYTFKISSCVLLSFPSTSKSNPKNYNLRNXHL-QCKCAKLKYT 588
           ++LE  F +++      PSTS S+P N N R   L +C      YT
Sbjct: 443 VNLENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYT 488


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 358 DYDTRIVLKVYKYSITXSERFPL 290
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,336,973
Number of Sequences: 27780
Number of extensions: 286245
Number of successful extensions: 790
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)