Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_K05
(593 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) simi... 166 1e-41
At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B) 166 1e-41
At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) iden... 166 1e-41
At5g46160.2 68418.m05678 ribosomal protein L14 family protein / ... 35 0.036
At5g46160.1 68418.m05677 ribosomal protein L14 family protein / ... 35 0.036
At1g17560.1 68414.m02163 ribosomal protein L14 family protein si... 33 0.19
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle... 29 2.3
At5g66560.1 68418.m08391 phototropic-responsive NPH3 family prot... 27 7.1
At1g50840.1 68414.m05717 polI-like DNA polymerase, putative simi... 27 7.1
>At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) similar
to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana
tabacum]
Length = 140
Score = 166 bits (403), Expect = 1e-41
Identities = 81/120 (67%), Positives = 100/120 (83%)
Frame = +2
Query: 38 MSKRGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRICM*SLSKVIKGRLNRLPAAGSGD 217
MSKRGRGG++G KFR+SLGLP ++ A+ + + S+ K IKGRLNRLP+A GD
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGD 59
Query: 218 MIVATVKKGKPELRKKVMPAVVIRQRKPFRXRDGVFIYFEDNAGVIVNNKGEMKGSAITG 397
M++ATVKKGKP+LRKKV+PAV++RQRKP+R +DGVF+YFEDNAGVIVN KGEMKGSAITG
Sbjct: 60 MVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITG 119
Score = 33.1 bits (72), Expect = 0.14
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 396 GPVAKECADLWPR 434
GP+ KECADLWPR
Sbjct: 119 GPIGKECADLWPR 131
>At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)
Length = 140
Score = 166 bits (403), Expect = 1e-41
Identities = 81/120 (67%), Positives = 100/120 (83%)
Frame = +2
Query: 38 MSKRGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRICM*SLSKVIKGRLNRLPAAGSGD 217
MSKRGRGG++G KFR+SLGLP ++ A+ + + S+ K IKGRLNRLP+A GD
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGD 59
Query: 218 MIVATVKKGKPELRKKVMPAVVIRQRKPFRXRDGVFIYFEDNAGVIVNNKGEMKGSAITG 397
M++ATVKKGKP+LRKKV+PAV++RQRKP+R +DGVF+YFEDNAGVIVN KGEMKGSAITG
Sbjct: 60 MVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITG 119
Score = 33.1 bits (72), Expect = 0.14
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 396 GPVAKECADLWPR 434
GP+ KECADLWPR
Sbjct: 119 GPIGKECADLWPR 131
>At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A)
identical to GB:AAB80655
Length = 140
Score = 166 bits (403), Expect = 1e-41
Identities = 81/120 (67%), Positives = 100/120 (83%)
Frame = +2
Query: 38 MSKRGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRICM*SLSKVIKGRLNRLPAAGSGD 217
MSKRGRGG++G KFR+SLGLP ++ A+ + + S+ K IKGRLNRLP+A GD
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGD 59
Query: 218 MIVATVKKGKPELRKKVMPAVVIRQRKPFRXRDGVFIYFEDNAGVIVNNKGEMKGSAITG 397
M++ATVKKGKP+LRKKV+PAV++RQRKP+R +DGVF+YFEDNAGVIVN KGEMKGSAITG
Sbjct: 60 MVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITG 119
Score = 33.1 bits (72), Expect = 0.14
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 396 GPVAKECADLWPR 434
GP+ KECADLWPR
Sbjct: 119 GPIGKECADLWPR 131
>At5g46160.2 68418.m05678 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 172
Score = 35.1 bits (77), Expect = 0.036
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +2
Query: 212 GDMIVATVKKGKPELRKK---VMPAVVIRQRKPFRXRDGVFIYFEDNAGVIVNNK 367
GD IVA+VK+ P + K V+ VV+R DG + F+DNA V+V++K
Sbjct: 79 GDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSK 133
>At5g46160.1 68418.m05677 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 173
Score = 35.1 bits (77), Expect = 0.036
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +2
Query: 212 GDMIVATVKKGKPELRKK---VMPAVVIRQRKPFRXRDGVFIYFEDNAGVIVNNK 367
GD IVA+VK+ P + K V+ VV+R DG + F+DNA V+V++K
Sbjct: 80 GDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSK 134
>At1g17560.1 68414.m02163 ribosomal protein L14 family protein
similar to GB:Z98756 from (Mycobacterium leprae)
Length = 196
Score = 32.7 bits (71), Expect = 0.19
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Frame = +2
Query: 212 GDMIVATVKKGKPELRKKV----MP-----------AVVIRQRKPFRXRDGVFIYFEDNA 346
GD+IV +VK+ P ++KKV +P VV+R P DG + F+DNA
Sbjct: 81 GDIIVGSVKEANPIVQKKVKKDAIPKGKVKKGMVVYGVVVRAAMPKGRADGSQVKFDDNA 140
Query: 347 GVIVNNKGEMKGSAITGACSQRM 415
V+V K E KG + ++M
Sbjct: 141 IVVVGIK-EKKGQNNSHGSKRKM 162
>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 985
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 274 RHYLFPEFRFTLFDCGHNHVPGTGRRQSVQ 185
R YL PEF+F P GRRQS Q
Sbjct: 204 RVYLLPEFQFVQVFVAGLQAPSMGRRQSTQ 233
>At5g66560.1 68418.m08391 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 668
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 15 FQNFDTTKCLREDVVVPRERNSVSPWVSQLGAVINCADNTGRKESVCD 158
F + K LRE + + SVSP LG C D+ + S D
Sbjct: 164 FLSHSVYKSLRESIKALKACESVSPLAGSLGITEQCIDSIVSRASSAD 211
>At1g50840.1 68414.m05717 polI-like DNA polymerase, putative similar
to PolI-like DNA polymerase [Oryza sativa] GI:19912795
contains Pfam profiles PF01612: 3'-5' exonuclease,
PF00476: DNA polymerase I family A
Length = 1050
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 172 NLGQRSHTDSLRPVLSAQLITAPSWETQG--DTEFRSRGTTTSS 47
NL + + P++S+ APS+ET D EF+ RGTT S+
Sbjct: 142 NLDDNGYFNGSVPIISS----APSYETSQKIDYEFKPRGTTRST 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,563,726
Number of Sequences: 28952
Number of extensions: 267126
Number of successful extensions: 740
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -